miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 80862 0.66 0.851289
Target:  5'- aCGCGGgGCUCGGugucGGGCGGUccGcgGCGg -3'
miRNA:   3'- -GCGCUgCGGGCC----UCCGCUAucCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 195299 0.66 0.820465
Target:  5'- gGcCGGCGCCgaaGGGcGCGAgcucAGGUGCGc -3'
miRNA:   3'- gC-GCUGCGGg--CCUcCGCUa---UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 196192 0.66 0.820465
Target:  5'- gGCGACGgCCGGGucccuGGCGAgccuccGGcGCGu -3'
miRNA:   3'- gCGCUGCgGGCCU-----CCGCUau----CCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 208674 0.66 0.820465
Target:  5'- gGCGGCGuCCCGGGGGCcgcugucccugGAcGGGUa-- -3'
miRNA:   3'- gCGCUGC-GGGCCUCCG-----------CUaUCCAcgc -5'
8954 3' -60.6 NC_002512.2 + 126581 0.66 0.836202
Target:  5'- gGCGaACGCCCGGAucuGG-GAcAGGUcccgGCGg -3'
miRNA:   3'- gCGC-UGCGGGCCU---CCgCUaUCCA----CGC- -5'
8954 3' -60.6 NC_002512.2 + 103065 0.67 0.748479
Target:  5'- gCGCGACGacgggacggacuaCgGGAGGCGAUcccGGGgacggGCGc -3'
miRNA:   3'- -GCGCUGCg------------GgCCUCCGCUA---UCCa----CGC- -5'
8954 3' -60.6 NC_002512.2 + 91919 0.67 0.795755
Target:  5'- gGCGGCGCgCCGucGGCGGccgacuuggucuUGGGcGCGa -3'
miRNA:   3'- gCGCUGCG-GGCcuCCGCU------------AUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 204988 0.67 0.795755
Target:  5'- gGCGACGgggaCCGGaAGGCG--GGG-GCGa -3'
miRNA:   3'- gCGCUGCg---GGCC-UCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 224133 0.67 0.78725
Target:  5'- cCGUGgacccGCGCCgGGAGGCGGacgcgugAGGcgggGCGg -3'
miRNA:   3'- -GCGC-----UGCGGgCCUCCGCUa------UCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 201446 0.67 0.78725
Target:  5'- uCGCGAUcucgGCCUcGAGGUGGUccccgucggccgGGGUGCa -3'
miRNA:   3'- -GCGCUG----CGGGcCUCCGCUA------------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 129099 0.67 0.78725
Target:  5'- aGCG-UGUCggCGGAGGCGuuccGGGUGCa -3'
miRNA:   3'- gCGCuGCGG--GCCUCCGCua--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 116732 0.67 0.769882
Target:  5'- cCGaCGugGCCCGGcugauGGCGAUGGaccagGCc -3'
miRNA:   3'- -GC-GCugCGGGCCu----CCGCUAUCca---CGc -5'
8954 3' -60.6 NC_002512.2 + 38041 0.67 0.761034
Target:  5'- gGgGACGCCgGaGGGGUGggAGG-GCGc -3'
miRNA:   3'- gCgCUGCGGgC-CUCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 133391 0.67 0.761034
Target:  5'- gGCGGuCGCCCGGAccauggagGGCGAgacGGccGCGc -3'
miRNA:   3'- gCGCU-GCGGGCCU--------CCGCUau-CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 53849 0.67 0.761034
Target:  5'- gGCGGCGCCgGGAGGaGAgGGGgacCGu -3'
miRNA:   3'- gCGCUGCGGgCCUCCgCUaUCCac-GC- -5'
8954 3' -60.6 NC_002512.2 + 107159 0.67 0.761034
Target:  5'- gCGCGuuucCGCCCGGgaGGGCGuugaugccGUGCGg -3'
miRNA:   3'- -GCGCu---GCGGGCC--UCCGCuauc----CACGC- -5'
8954 3' -60.6 NC_002512.2 + 21215 0.67 0.778624
Target:  5'- aGCGGCccccgggacgccGCCCGG-GGCGGagacgGGG-GCGg -3'
miRNA:   3'- gCGCUG------------CGGGCCuCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 105534 0.67 0.778624
Target:  5'- -cCGGCGCCCGGGGGUcgaaGAUcAGGUacaGCc -3'
miRNA:   3'- gcGCUGCGGGCCUCCG----CUA-UCCA---CGc -5'
8954 3' -60.6 NC_002512.2 + 120780 0.67 0.78725
Target:  5'- gGCGGcCGUCggCGGGGGCGGcGGGacgGCGg -3'
miRNA:   3'- gCGCU-GCGG--GCCUCCGCUaUCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 131736 0.67 0.795755
Target:  5'- aCGCGGCGaccgCCGG-GGCGGgcGGccGCGa -3'
miRNA:   3'- -GCGCUGCg---GGCCuCCGCUauCCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.