miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 72 0.73 0.429379
Target:  5'- uCGCgGGCGCgaGGAGGCGAgAGGcgGCGg -3'
miRNA:   3'- -GCG-CUGCGggCCUCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 172 0.69 0.677804
Target:  5'- gCGCG-CGCCgGGAGG-GAcGGGgGCGa -3'
miRNA:   3'- -GCGCuGCGGgCCUCCgCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 2830 0.66 0.820465
Target:  5'- gCGCGG-GCCCGGAcgacGGCGGgcAGcUGCGg -3'
miRNA:   3'- -GCGCUgCGGGCCU----CCGCUa-UCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 4571 0.72 0.517005
Target:  5'- uGCGGCGUCUGG-GGCGGcggAGGagGCGg -3'
miRNA:   3'- gCGCUGCGGGCCuCCGCUa--UCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 6395 0.66 0.84383
Target:  5'- uCGCGACggGCagGGAGGCGGcggcggcgcUGGGgaagGCGg -3'
miRNA:   3'- -GCGCUG--CGggCCUCCGCU---------AUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 11680 0.68 0.715442
Target:  5'- cCGCGGCccgaggcggggGCCCGaGGGGCGAggcAGGagccgGCGu -3'
miRNA:   3'- -GCGCUG-----------CGGGC-CUCCGCUa--UCCa----CGC- -5'
8954 3' -60.6 NC_002512.2 + 13687 0.68 0.715442
Target:  5'- gGCGACgGCCgCGGcGGUGAUcacGGGcGCGa -3'
miRNA:   3'- gCGCUG-CGG-GCCuCCGCUA---UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 13726 0.66 0.81237
Target:  5'- aCGCGGgaGCCUGaGGGGCGcgAcgccGGUGUGa -3'
miRNA:   3'- -GCGCUg-CGGGC-CUCCGCuaU----CCACGC- -5'
8954 3' -60.6 NC_002512.2 + 16930 0.73 0.437755
Target:  5'- -uCGAC-CCCGGAGGCGccGUAGG-GCGa -3'
miRNA:   3'- gcGCUGcGGGCCUCCGC--UAUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 17031 0.68 0.733918
Target:  5'- gGgGACGCUCGGAGGgGAcGGacgGCGc -3'
miRNA:   3'- gCgCUGCGGGCCUCCgCUaUCca-CGC- -5'
8954 3' -60.6 NC_002512.2 + 17872 0.72 0.472166
Target:  5'- uCGCGcaGgGCCCGGGGGacguGAUAGGcgGCGg -3'
miRNA:   3'- -GCGC--UgCGGGCCUCCg---CUAUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 21215 0.67 0.778624
Target:  5'- aGCGGCccccgggacgccGCCCGG-GGCGGagacgGGG-GCGg -3'
miRNA:   3'- gCGCUG------------CGGGCCuCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 22581 0.66 0.851289
Target:  5'- gGUGAacgGCUCGGAGGCcac-GGUGCu -3'
miRNA:   3'- gCGCUg--CGGGCCUCCGcuauCCACGc -5'
8954 3' -60.6 NC_002512.2 + 25610 0.88 0.056665
Target:  5'- uCGCGcACGUCCaGGAGGCGGUAGGUGUGg -3'
miRNA:   3'- -GCGC-UGCGGG-CCUCCGCUAUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 32836 0.66 0.820465
Target:  5'- gGUGGUGCCCaggcugcaGGAGGUGAcggugccgUGGGUGCc -3'
miRNA:   3'- gCGCUGCGGG--------CCUCCGCU--------AUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 38041 0.67 0.761034
Target:  5'- gGgGACGCCgGaGGGGUGggAGG-GCGc -3'
miRNA:   3'- gCgCUGCGGgC-CUCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 38914 0.68 0.743044
Target:  5'- gGCGACgGCCCGGAGgggccgccGCGGcGGGcGCc -3'
miRNA:   3'- gCGCUG-CGGGCCUC--------CGCUaUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 40369 0.68 0.743044
Target:  5'- cCGCGGCgagcccggGCCCGGAgcgucuccaccuGGCGGUgacggccaGGGUGUa -3'
miRNA:   3'- -GCGCUG--------CGGGCCU------------CCGCUA--------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 46039 0.69 0.675904
Target:  5'- cCGgGACGCCCGGAaucgguagcgcagGGCGucgagcagcguguGUGGGUGa- -3'
miRNA:   3'- -GCgCUGCGGGCCU-------------CCGC-------------UAUCCACgc -5'
8954 3' -60.6 NC_002512.2 + 50853 0.66 0.851289
Target:  5'- gCGCuGACGUCCGcGGaccugcuacuGGCGGgaaAGGUGCu -3'
miRNA:   3'- -GCG-CUGCGGGC-CU----------CCGCUa--UCCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.