miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 229575 0.69 0.677804
Target:  5'- gCGCG-CGCCgGGAGG-GAcGGGgGCGa -3'
miRNA:   3'- -GCGCuGCGGgCCUCCgCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 229476 0.73 0.429379
Target:  5'- uCGCgGGCGCgaGGAGGCGAgAGGcgGCGg -3'
miRNA:   3'- -GCG-CUGCGggCCUCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 228414 0.71 0.572886
Target:  5'- aCGgGGCGCUgGGGGGCG--GGG-GCGg -3'
miRNA:   3'- -GCgCUGCGGgCCUCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 227606 0.68 0.743044
Target:  5'- cCGCaGCGgCCGGAgGGCGGgcGGcgGCGg -3'
miRNA:   3'- -GCGcUGCgGGCCU-CCGCUauCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 227506 0.66 0.84383
Target:  5'- aCGCcGCGaCCCGGGGGgGAgaguccGGcgGCGg -3'
miRNA:   3'- -GCGcUGC-GGGCCUCCgCUau----CCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 227225 0.66 0.80413
Target:  5'- gGCGGCGgaCCgGGAGGCGcgGcGGacggGCGg -3'
miRNA:   3'- gCGCUGC--GGgCCUCCGCuaU-CCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 226735 0.68 0.743044
Target:  5'- aGCGAggcUGuCCCGGAgacGGCGGaGGcGUGCGg -3'
miRNA:   3'- gCGCU---GC-GGGCCU---CCGCUaUC-CACGC- -5'
8954 3' -60.6 NC_002512.2 + 224133 0.67 0.78725
Target:  5'- cCGUGgacccGCGCCgGGAGGCGGacgcgugAGGcgggGCGg -3'
miRNA:   3'- -GCGC-----UGCGGgCCUCCGCUa------UCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 222652 0.68 0.706108
Target:  5'- cCGCGACGgCCGGccGGGCcg-AGGgGCGc -3'
miRNA:   3'- -GCGCUGCgGGCC--UCCGcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 222336 0.68 0.743044
Target:  5'- gGCGGCGCCUccaGGAGGagg-AGGaGCGg -3'
miRNA:   3'- gCGCUGCGGG---CCUCCgcuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 220214 0.68 0.715442
Target:  5'- cCGaCGGCgGCCCGGGGGaCGA---GUGCGc -3'
miRNA:   3'- -GC-GCUG-CGGGCCUCC-GCUaucCACGC- -5'
8954 3' -60.6 NC_002512.2 + 219780 0.68 0.733918
Target:  5'- cCGCGGCcgGCCCGGccgGGGacacaGAUAGGggacGCGc -3'
miRNA:   3'- -GCGCUG--CGGGCC---UCCg----CUAUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 219706 0.7 0.620498
Target:  5'- gCGuCGGCGCUCGGGGcGCGAgAGGcgGCc -3'
miRNA:   3'- -GC-GCUGCGGGCCUC-CGCUaUCCa-CGc -5'
8954 3' -60.6 NC_002512.2 + 219413 0.66 0.820465
Target:  5'- cCGCGACGCCCacgcccGGGGCGGcg---GCGg -3'
miRNA:   3'- -GCGCUGCGGGc-----CUCCGCUauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 217501 0.68 0.706108
Target:  5'- cCGcCGcCGCCCGaAGGCGAgcucgggGGGUcGCGg -3'
miRNA:   3'- -GC-GCuGCGGGCcUCCGCUa------UCCA-CGC- -5'
8954 3' -60.6 NC_002512.2 + 214010 1.08 0.002437
Target:  5'- gCGCGACGCCCGGAGGCGAUAGGUGCGu -3'
miRNA:   3'- -GCGCUGCGGGCCUCCGCUAUCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 213653 0.66 0.80413
Target:  5'- gGCGACGacgacgaugaCGGAGGCGGaGGGgagcccgGCGu -3'
miRNA:   3'- gCGCUGCgg--------GCCUCCGCUaUCCa------CGC- -5'
8954 3' -60.6 NC_002512.2 + 213001 0.7 0.601388
Target:  5'- cCGCGGCcgucggGCCCGG-GGCccucucgAGGUGCGu -3'
miRNA:   3'- -GCGCUG------CGGGCCuCCGcua----UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 212595 0.68 0.733918
Target:  5'- aCGCGAUGUCCGGAGaCGAggaggacgacgAGGacGCGg -3'
miRNA:   3'- -GCGCUGCGGGCCUCcGCUa----------UCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 208674 0.66 0.820465
Target:  5'- gGCGGCGuCCCGGGGGCcgcugucccugGAcGGGUa-- -3'
miRNA:   3'- gCGCUGC-GGGCCUCCG-----------CUaUCCAcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.