miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 206561 0.66 0.851289
Target:  5'- cCGcCGGCgGCCCGG-GGCGccagaacugcAGGUGCc -3'
miRNA:   3'- -GC-GCUG-CGGGCCuCCGCua--------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 204988 0.67 0.795755
Target:  5'- gGCGACGgggaCCGGaAGGCG--GGG-GCGa -3'
miRNA:   3'- gCGCUGCg---GGCC-UCCGCuaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 204715 0.69 0.637725
Target:  5'- gGCGACggcggGCCCGG-GGCGGggggccggacccGGGUGCu -3'
miRNA:   3'- gCGCUG-----CGGGCCuCCGCUa-----------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 202512 0.66 0.80413
Target:  5'- gGCGGCGgaggCGGAGGCGGcggcgGGG-GCGg -3'
miRNA:   3'- gCGCUGCgg--GCCUCCGCUa----UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 201823 0.66 0.840798
Target:  5'- cCGCcGCGCCCGGGGGCuccuuccGCGg -3'
miRNA:   3'- -GCGcUGCGGGCCUCCGcuauccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 201653 0.66 0.819662
Target:  5'- gCGCGACGgcCCCGGccGCGGUuccuucuucggcgAGG-GCGg -3'
miRNA:   3'- -GCGCUGC--GGGCCucCGCUA-------------UCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 201446 0.67 0.78725
Target:  5'- uCGCGAUcucgGCCUcGAGGUGGUccccgucggccgGGGUGCa -3'
miRNA:   3'- -GCGCUG----CGGGcCUCCGCUA------------UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 198011 0.68 0.715442
Target:  5'- gGCGACGgaCGGGGGCGA-GGGacGCGc -3'
miRNA:   3'- gCGCUGCggGCCUCCGCUaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 196389 0.68 0.696718
Target:  5'- uCGgGACGCCgCGGGucuGGCGcgGGGacGCGg -3'
miRNA:   3'- -GCgCUGCGG-GCCU---CCGCuaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 196192 0.66 0.820465
Target:  5'- gGCGACGgCCGGGucccuGGCGAgccuccGGcGCGu -3'
miRNA:   3'- gCGCUGCgGGCCU-----CCGCUau----CCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 195299 0.66 0.820465
Target:  5'- gGcCGGCGCCgaaGGGcGCGAgcucAGGUGCGc -3'
miRNA:   3'- gC-GCUGCGGg--CCUcCGCUa---UCCACGC- -5'
8954 3' -60.6 NC_002512.2 + 195292 0.66 0.810733
Target:  5'- aCG-GACGCCaucaGGAGGCaacaugacuGGUGCGu -3'
miRNA:   3'- -GCgCUGCGGg---CCUCCGcuau-----CCACGC- -5'
8954 3' -60.6 NC_002512.2 + 189702 0.75 0.365936
Target:  5'- uCGuCGACGUCCGGgggaugucgGGGCGGUGGGgagGCa -3'
miRNA:   3'- -GC-GCUGCGGGCC---------UCCGCUAUCCa--CGc -5'
8954 3' -60.6 NC_002512.2 + 186738 0.66 0.819662
Target:  5'- gGUG-UGCCCuGGGGCGAUcguugaaGGGUGgGg -3'
miRNA:   3'- gCGCuGCGGGcCUCCGCUA-------UCCACgC- -5'
8954 3' -60.6 NC_002512.2 + 180016 0.66 0.819662
Target:  5'- aGCGggacucgaucACGCUCGGgaucuccgaucccAGGCGGUgcGGGUGCc -3'
miRNA:   3'- gCGC----------UGCGGGCC-------------UCCGCUA--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 170793 0.68 0.715442
Target:  5'- gCGCGACGa-CGGcGGCGAgGGGaGCGa -3'
miRNA:   3'- -GCGCUGCggGCCuCCGCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 169448 0.71 0.53542
Target:  5'- gGCGGCGCacaCCGGGucGGUGAagAGGUGCu -3'
miRNA:   3'- gCGCUGCG---GGCCU--CCGCUa-UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 168137 0.66 0.80413
Target:  5'- cCGCGGCGaggggCUGGGGGUGG-GGG-GCGg -3'
miRNA:   3'- -GCGCUGCg----GGCCUCCGCUaUCCaCGC- -5'
8954 3' -60.6 NC_002512.2 + 167602 0.69 0.643466
Target:  5'- uGCGACGCCCGGGacgaccucuuccuCGAUcGGGUGCc -3'
miRNA:   3'- gCGCUGCGGGCCUcc-----------GCUA-UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 162013 0.68 0.724715
Target:  5'- uGCGGacCGCCUGGccgacGGCGAgguGGUGCc -3'
miRNA:   3'- gCGCU--GCGGGCCu----CCGCUau-CCACGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.