miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 3' -60.6 NC_002512.2 + 81873 0.66 0.84383
Target:  5'- aGCGACagagGCCCagGGAGGCcGU-GGUGUa -3'
miRNA:   3'- gCGCUG----CGGG--CCUCCGcUAuCCACGc -5'
8954 3' -60.6 NC_002512.2 + 104281 0.66 0.828412
Target:  5'- gGCGucuuucucGCGUCCGGcGGCGggAGGcUGCc -3'
miRNA:   3'- gCGC--------UGCGGGCCuCCGCuaUCC-ACGc -5'
8954 3' -60.6 NC_002512.2 + 186738 0.66 0.819662
Target:  5'- gGUG-UGCCCuGGGGCGAUcguugaaGGGUGgGg -3'
miRNA:   3'- gCGCuGCGGGcCUCCGCUA-------UCCACgC- -5'
8954 3' -60.6 NC_002512.2 + 84277 0.66 0.836202
Target:  5'- aGCGGgccgaacgccCGCCUGGAGGUguucaucaGGUAGuUGCGg -3'
miRNA:   3'- gCGCU----------GCGGGCCUCCG--------CUAUCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 13726 0.66 0.81237
Target:  5'- aCGCGGgaGCCUGaGGGGCGcgAcgccGGUGUGa -3'
miRNA:   3'- -GCGCUg-CGGGC-CUCCGCuaU----CCACGC- -5'
8954 3' -60.6 NC_002512.2 + 106183 0.66 0.820465
Target:  5'- gGCGACGCCgGGuccuucggguuGGCGAUcauccGGUccGCGg -3'
miRNA:   3'- gCGCUGCGGgCCu----------CCGCUAu----CCA--CGC- -5'
8954 3' -60.6 NC_002512.2 + 50853 0.66 0.851289
Target:  5'- gCGCuGACGUCCGcGGaccugcuacuGGCGGgaaAGGUGCu -3'
miRNA:   3'- -GCG-CUGCGGGC-CU----------CCGCUa--UCCACGc -5'
8954 3' -60.6 NC_002512.2 + 103489 0.66 0.851289
Target:  5'- uCGaCGGCGCCCGG-GGCcccGGGcGCu -3'
miRNA:   3'- -GC-GCUGCGGGCCuCCGcuaUCCaCGc -5'
8954 3' -60.6 NC_002512.2 + 6395 0.66 0.84383
Target:  5'- uCGCGACggGCagGGAGGCGGcggcggcgcUGGGgaagGCGg -3'
miRNA:   3'- -GCGCUG--CGggCCUCCGCU---------AUCCa---CGC- -5'
8954 3' -60.6 NC_002512.2 + 108394 0.66 0.833105
Target:  5'- gGCGA-GCCCGGuGGGUGggGGGgaggacggggacgGCGg -3'
miRNA:   3'- gCGCUgCGGGCC-UCCGCuaUCCa------------CGC- -5'
8954 3' -60.6 NC_002512.2 + 129830 0.66 0.828412
Target:  5'- cCGCGGCcCCCgucgcgauGGAGGCGG-AGGcggagGCGg -3'
miRNA:   3'- -GCGCUGcGGG--------CCUCCGCUaUCCa----CGC- -5'
8954 3' -60.6 NC_002512.2 + 22581 0.66 0.851289
Target:  5'- gGUGAacgGCUCGGAGGCcac-GGUGCu -3'
miRNA:   3'- gCGCUg--CGGGCCUCCGcuauCCACGc -5'
8954 3' -60.6 NC_002512.2 + 101044 0.66 0.84383
Target:  5'- gCGCGGCGCCCGa--GCGGUgcAGcUGCGc -3'
miRNA:   3'- -GCGCUGCGGGCcucCGCUA--UCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 195292 0.66 0.810733
Target:  5'- aCG-GACGCCaucaGGAGGCaacaugacuGGUGCGu -3'
miRNA:   3'- -GCgCUGCGGg---CCUCCGcuau-----CCACGC- -5'
8954 3' -60.6 NC_002512.2 + 81993 0.66 0.851289
Target:  5'- gGgGGCGUCuCGGGGGCGGUcgcgGCGa -3'
miRNA:   3'- gCgCUGCGG-GCCUCCGCUAuccaCGC- -5'
8954 3' -60.6 NC_002512.2 + 116725 0.66 0.820465
Target:  5'- uCGCGuccCGCCCGGccGCGGcgAGGccgGCGc -3'
miRNA:   3'- -GCGCu--GCGGGCCucCGCUa-UCCa--CGC- -5'
8954 3' -60.6 NC_002512.2 + 2830 0.66 0.820465
Target:  5'- gCGCGG-GCCCGGAcgacGGCGGgcAGcUGCGg -3'
miRNA:   3'- -GCGCUgCGGGCCU----CCGCUa-UCcACGC- -5'
8954 3' -60.6 NC_002512.2 + 120609 0.66 0.820465
Target:  5'- aGCgGGCGCCgGuGAGaGCGggAGGcgGCGg -3'
miRNA:   3'- gCG-CUGCGGgC-CUC-CGCuaUCCa-CGC- -5'
8954 3' -60.6 NC_002512.2 + 32836 0.66 0.820465
Target:  5'- gGUGGUGCCCaggcugcaGGAGGUGAcggugccgUGGGUGCc -3'
miRNA:   3'- gCGCUGCGGG--------CCUCCGCU--------AUCCACGc -5'
8954 3' -60.6 NC_002512.2 + 80862 0.66 0.851289
Target:  5'- aCGCGGgGCUCGGugucGGGCGGUccGcgGCGg -3'
miRNA:   3'- -GCGCUgCGGGCC----UCCGCUAucCa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.