miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 45289 0.67 0.818934
Target:  5'- cGUCUCGCggGUCggacggACCGCCGccCUGCCg -3'
miRNA:   3'- -UAGAGCGggCAG------UGGCGGCa-GAUGGa -5'
8954 5' -59.4 NC_002512.2 + 56152 0.66 0.865193
Target:  5'- uGUCUCaCCUGUC-CCGuuGUCUGUCUc -3'
miRNA:   3'- -UAGAGcGGGCAGuGGCggCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 59051 0.71 0.585258
Target:  5'- ---aCGUCCGggUCGCCGCCG-CUGCCg -3'
miRNA:   3'- uagaGCGGGC--AGUGGCGGCaGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 59092 0.68 0.739659
Target:  5'- -gCUC-CCC-UCGCCGCCGUCgucgcGCCg -3'
miRNA:   3'- uaGAGcGGGcAGUGGCGGCAGa----UGGa -5'
8954 5' -59.4 NC_002512.2 + 69231 0.68 0.748915
Target:  5'- --gUC-CCCGUCGCCGCgGUCgauCCa -3'
miRNA:   3'- uagAGcGGGCAGUGGCGgCAGau-GGa -5'
8954 5' -59.4 NC_002512.2 + 74505 0.7 0.663212
Target:  5'- --aUCGCCCGccggCGCCGCCGcCccgACCUc -3'
miRNA:   3'- uagAGCGGGCa---GUGGCGGCaGa--UGGA- -5'
8954 5' -59.4 NC_002512.2 + 76762 0.73 0.481725
Target:  5'- --aUCGCCCGUC-CCGCCcGUCgccACCg -3'
miRNA:   3'- uagAGCGGGCAGuGGCGG-CAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 80165 0.69 0.692262
Target:  5'- -cCUCG-CUGUCGCCGUCGUCgcugcUGCCg -3'
miRNA:   3'- uaGAGCgGGCAGUGGCGGCAG-----AUGGa -5'
8954 5' -59.4 NC_002512.2 + 81411 0.69 0.692262
Target:  5'- uUCUCGUCC-UCcCCGCCGUCgcgGCUc -3'
miRNA:   3'- uAGAGCGGGcAGuGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 82183 0.69 0.672929
Target:  5'- gGUCgagaGCCCGU--CCGCCGUCggGCCg -3'
miRNA:   3'- -UAGag--CGGGCAguGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 82923 0.7 0.65932
Target:  5'- aGUCUCGgCCGcgGCCGCCGUCgucgcgcuucacgGCCa -3'
miRNA:   3'- -UAGAGCgGGCagUGGCGGCAGa------------UGGa -5'
8954 5' -59.4 NC_002512.2 + 88152 0.69 0.692262
Target:  5'- gAUC-CGCCCGUgGCCGUCGUgCgggaACCg -3'
miRNA:   3'- -UAGaGCGGGCAgUGGCGGCA-Ga---UGGa -5'
8954 5' -59.4 NC_002512.2 + 90868 0.7 0.653474
Target:  5'- ---cCGUCCG-CGCCGCCGUCggACCc -3'
miRNA:   3'- uagaGCGGGCaGUGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 98168 0.67 0.808969
Target:  5'- gGUCccgCGCCCGUCAUCGUCuccgagcagcaCUACCUg -3'
miRNA:   3'- -UAGa--GCGGGCAGUGGCGGca---------GAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 99042 0.68 0.776088
Target:  5'- -cCUCGCCCG--ACCGCCGguaCUcgACCg -3'
miRNA:   3'- uaGAGCGGGCagUGGCGGCa--GA--UGGa -5'
8954 5' -59.4 NC_002512.2 + 99619 0.66 0.857928
Target:  5'- ---gCGCUCGUCGCgGUCGUCgcCCUc -3'
miRNA:   3'- uagaGCGGGCAGUGgCGGCAGauGGA- -5'
8954 5' -59.4 NC_002512.2 + 99714 0.66 0.835041
Target:  5'- -cCUCGUCCG-CGCCGUCGcggGCCg -3'
miRNA:   3'- uaGAGCGGGCaGUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 103227 0.66 0.857928
Target:  5'- -gCUCGC--GUCGCCGCCcGUCgacgGCCg -3'
miRNA:   3'- uaGAGCGggCAGUGGCGG-CAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 105614 0.68 0.739659
Target:  5'- ---aCGCCCGgguccgaCGCCGCCGUCgggugcACCg -3'
miRNA:   3'- uagaGCGGGCa------GUGGCGGCAGa-----UGGa -5'
8954 5' -59.4 NC_002512.2 + 106704 0.69 0.7209
Target:  5'- -cCUCGuCCCGUC-CCGCC-UCgGCCUc -3'
miRNA:   3'- uaGAGC-GGGCAGuGGCGGcAGaUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.