miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 128336 0.71 0.575586
Target:  5'- -cCUCGacuccgucCCCGcCGCCGCCGUCU-CCUu -3'
miRNA:   3'- uaGAGC--------GGGCaGUGGCGGCAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 59051 0.71 0.585258
Target:  5'- ---aCGUCCGggUCGCCGCCG-CUGCCg -3'
miRNA:   3'- uagaGCGGGC--AGUGGCGGCaGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 107207 0.71 0.585258
Target:  5'- -aCUCGCCCGggccCcUCGCCGUC-ACCUg -3'
miRNA:   3'- uaGAGCGGGCa---GuGGCGGCAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 2969 0.71 0.594961
Target:  5'- cGUCUucCGCCCcuUCGCCGUCGUCUuCCg -3'
miRNA:   3'- -UAGA--GCGGGc-AGUGGCGGCAGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 119041 0.7 0.614435
Target:  5'- cGUCguggGCCUGuUCGCCGCgcaCGUCUGCCUg -3'
miRNA:   3'- -UAGag--CGGGC-AGUGGCG---GCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 126837 0.7 0.624193
Target:  5'- cGUCgCGCUCGUCGCgGUCGUC-GCCg -3'
miRNA:   3'- -UAGaGCGGGCAGUGgCGGCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 90868 0.7 0.653474
Target:  5'- ---cCGUCCG-CGCCGCCGUCggACCc -3'
miRNA:   3'- uagaGCGGGCaGUGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 82923 0.7 0.65932
Target:  5'- aGUCUCGgCCGcgGCCGCCGUCgucgcgcuucacgGCCa -3'
miRNA:   3'- -UAGAGCgGGCagUGGCGGCAGa------------UGGa -5'
8954 5' -59.4 NC_002512.2 + 74505 0.7 0.663212
Target:  5'- --aUCGCCCGccggCGCCGCCGcCccgACCUc -3'
miRNA:   3'- uagAGCGGGCa---GUGGCGGCaGa--UGGA- -5'
8954 5' -59.4 NC_002512.2 + 22277 0.7 0.663213
Target:  5'- -aCUCGCCgccgcagcaGcCGCCGCCGUCgcagGCCa -3'
miRNA:   3'- uaGAGCGGg--------CaGUGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 82183 0.69 0.672929
Target:  5'- gGUCgagaGCCCGU--CCGCCGUCggGCCg -3'
miRNA:   3'- -UAGag--CGGGCAguGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 2360 0.69 0.672929
Target:  5'- cUCcCGCCCGUcCGCCGCCGgacUCUcCCc -3'
miRNA:   3'- uAGaGCGGGCA-GUGGCGGC---AGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 225452 0.69 0.682614
Target:  5'- ---gCGCCCGgCAccCCGCCGgUCUACCa -3'
miRNA:   3'- uagaGCGGGCaGU--GGCGGC-AGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 149877 0.69 0.692262
Target:  5'- -cCUCGUCCGgcuccgGCUGCCG-CUGCCUg -3'
miRNA:   3'- uaGAGCGGGCag----UGGCGGCaGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 155325 0.69 0.692262
Target:  5'- gAUCUCGCCaaccucgcuccCGUCGCCGCgG-CcGCCUg -3'
miRNA:   3'- -UAGAGCGG-----------GCAGUGGCGgCaGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 81411 0.69 0.692262
Target:  5'- uUCUCGUCC-UCcCCGCCGUCgcgGCUc -3'
miRNA:   3'- uAGAGCGGGcAGuGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 174145 0.69 0.692262
Target:  5'- -aCUCGCUCGaCACCGUgGUC-ACCg -3'
miRNA:   3'- uaGAGCGGGCaGUGGCGgCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 163648 0.69 0.692262
Target:  5'- cAUCUacgggcgGCCCGUCACCGCCagcugGCCg -3'
miRNA:   3'- -UAGAg------CGGGCAGUGGCGGcaga-UGGa -5'
8954 5' -59.4 NC_002512.2 + 80165 0.69 0.692262
Target:  5'- -cCUCG-CUGUCGCCGUCGUCgcugcUGCCg -3'
miRNA:   3'- uaGAGCgGGCAGUGGCGGCAG-----AUGGa -5'
8954 5' -59.4 NC_002512.2 + 17308 0.69 0.692262
Target:  5'- --aUCGCgUCGUCGCCGCCGUCg---- -3'
miRNA:   3'- uagAGCG-GGCAGUGGCGGCAGaugga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.