miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 214044 1.05 0.004233
Target:  5'- cAUCUCGCCCGUCACCGCCGUCUACCUc -3'
miRNA:   3'- -UAGAGCGGGCAGUGGCGGCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 224950 0.76 0.32059
Target:  5'- gGUgUCGCUCGgcuCCGCCGUCUACCc -3'
miRNA:   3'- -UAgAGCGGGCaguGGCGGCAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 172004 0.76 0.342011
Target:  5'- --gUCG-CCGUCGCCGCCGUC-GCCUg -3'
miRNA:   3'- uagAGCgGGCAGUGGCGGCAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 149209 0.75 0.372149
Target:  5'- -gCUCGCCCccGUCGCCGCCGcCgcgggACCg -3'
miRNA:   3'- uaGAGCGGG--CAGUGGCGGCaGa----UGGa -5'
8954 5' -59.4 NC_002512.2 + 190321 0.74 0.412284
Target:  5'- uUgUCGCCCGUCGCCGCCcUUggcACCg -3'
miRNA:   3'- uAgAGCGGGCAGUGGCGGcAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 3474 0.74 0.420626
Target:  5'- uUCUCGCCaucuccauCGUCGCCGCCGaCU-CCUg -3'
miRNA:   3'- uAGAGCGG--------GCAGUGGCGGCaGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 1107 0.74 0.420626
Target:  5'- -cCUCuCCCGUCuCCGCCGUCUcggucGCCUc -3'
miRNA:   3'- uaGAGcGGGCAGuGGCGGCAGA-----UGGA- -5'
8954 5' -59.4 NC_002512.2 + 173528 0.74 0.437613
Target:  5'- gAUC-CGUCCGUCGggGCCGUCUGCCc -3'
miRNA:   3'- -UAGaGCGGGCAGUggCGGCAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 39991 0.73 0.463812
Target:  5'- -cCUCGCcgCCGUCcucgccGCCGCCGUCUccGCCg -3'
miRNA:   3'- uaGAGCG--GGCAG------UGGCGGCAGA--UGGa -5'
8954 5' -59.4 NC_002512.2 + 76762 0.73 0.481725
Target:  5'- --aUCGCCCGUC-CCGCCcGUCgccACCg -3'
miRNA:   3'- uagAGCGGGCAGuGGCGG-CAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 205606 0.72 0.499968
Target:  5'- uGUCcCGCgggaugCCGUCGCCGCCGUCcuuCCUg -3'
miRNA:   3'- -UAGaGCG------GGCAGUGGCGGCAGau-GGA- -5'
8954 5' -59.4 NC_002512.2 + 38618 0.72 0.527883
Target:  5'- -cCUC-CCCGUCGCCGCCuccccgcccucUCUACCUg -3'
miRNA:   3'- uaGAGcGGGCAGUGGCGGc----------AGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 34867 0.72 0.537319
Target:  5'- uUCgUCGCCguCGUCGCCGCCGcCgggACCg -3'
miRNA:   3'- uAG-AGCGG--GCAGUGGCGGCaGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 131262 0.72 0.537319
Target:  5'- cGUCUCGCUCGUCACgGCCaucCUGCg- -3'
miRNA:   3'- -UAGAGCGGGCAGUGgCGGca-GAUGga -5'
8954 5' -59.4 NC_002512.2 + 216190 0.72 0.546812
Target:  5'- gAUCgCGCCCGugaUCACCGCCG-CgGCCg -3'
miRNA:   3'- -UAGaGCGGGC---AGUGGCGGCaGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 112893 0.72 0.546812
Target:  5'- uUCUCGUCgGUCGCCGC-GUCgcggACCa -3'
miRNA:   3'- uAGAGCGGgCAGUGGCGgCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 171934 0.72 0.546812
Target:  5'- -cUUCGCCCGccgCGCCGCgccCGUCUAUCUc -3'
miRNA:   3'- uaGAGCGGGCa--GUGGCG---GCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 154604 0.71 0.556357
Target:  5'- cAUCgUCGCcgCCGcCGCCGCCGUCgccGCCa -3'
miRNA:   3'- -UAG-AGCG--GGCaGUGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 1659 0.71 0.556357
Target:  5'- -gUUCGCCCuUC-CCGCCGUCUcGCCc -3'
miRNA:   3'- uaGAGCGGGcAGuGGCGGCAGA-UGGa -5'
8954 5' -59.4 NC_002512.2 + 165298 0.71 0.5698
Target:  5'- cAUCUCGCCgCG-CGCCGCuCGUCgcugugcggcuacgGCCUg -3'
miRNA:   3'- -UAGAGCGG-GCaGUGGCG-GCAGa-------------UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.