miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 218048 0.67 0.827068
Target:  5'- -cCUC-CCCGUCGCCGCguCGUCggggAUCa -3'
miRNA:   3'- uaGAGcGGGCAGUGGCG--GCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 147956 0.67 0.827068
Target:  5'- cUC-CGCCC-UCGCCGUCGUCgucccCCUc -3'
miRNA:   3'- uAGaGCGGGcAGUGGCGGCAGau---GGA- -5'
8954 5' -59.4 NC_002512.2 + 108730 0.67 0.822207
Target:  5'- -cCUCGCCCugggccgcggccggcGUCucgGCCGCCGUCgacggguucgggUACCg -3'
miRNA:   3'- uaGAGCGGG---------------CAG---UGGCGGCAG------------AUGGa -5'
8954 5' -59.4 NC_002512.2 + 128966 0.67 0.818934
Target:  5'- uUCUCcgGCCUGUCuuccuACCGCCGg--GCCUu -3'
miRNA:   3'- uAGAG--CGGGCAG-----UGGCGGCagaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 45289 0.67 0.818934
Target:  5'- cGUCUCGCggGUCggacggACCGCCGccCUGCCg -3'
miRNA:   3'- -UAGAGCGggCAG------UGGCGGCa-GAUGGa -5'
8954 5' -59.4 NC_002512.2 + 173501 0.67 0.818934
Target:  5'- uGUCUCGaCCuCGcC-CCGCCGUCcGCCn -3'
miRNA:   3'- -UAGAGC-GG-GCaGuGGCGGCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 220542 0.67 0.818934
Target:  5'- -gCUgCGCgagggCGUCA-CGCCGUCUACCUg -3'
miRNA:   3'- uaGA-GCGg----GCAGUgGCGGCAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 117352 0.67 0.810645
Target:  5'- uUCUU-CCUGccCGCCGCCGUCUGCa- -3'
miRNA:   3'- uAGAGcGGGCa-GUGGCGGCAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 128260 0.67 0.810645
Target:  5'- -cCUCGUCCGaCGgguCCGCCGUC-ACCc -3'
miRNA:   3'- uaGAGCGGGCaGU---GGCGGCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 121135 0.67 0.810645
Target:  5'- --aUCGCCCG-CGCCGCgcaCUGCCUc -3'
miRNA:   3'- uagAGCGGGCaGUGGCGgcaGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 111793 0.67 0.810645
Target:  5'- gGUC-CGCgCgGUCGCCGCCGgc-GCCg -3'
miRNA:   3'- -UAGaGCG-GgCAGUGGCGGCagaUGGa -5'
8954 5' -59.4 NC_002512.2 + 98168 0.67 0.808969
Target:  5'- gGUCccgCGCCCGUCAUCGUCuccgagcagcaCUACCUg -3'
miRNA:   3'- -UAGa--GCGGGCAGUGGCGGca---------GAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 16229 0.67 0.802209
Target:  5'- cUC-CGCcuCCGUCAUCGUCGUCgucGCCg -3'
miRNA:   3'- uAGaGCG--GGCAGUGGCGGCAGa--UGGa -5'
8954 5' -59.4 NC_002512.2 + 126225 0.67 0.802209
Target:  5'- cGUCgaggCGCUCGUgGCCGCCGaggaggGCCg -3'
miRNA:   3'- -UAGa---GCGGGCAgUGGCGGCaga---UGGa -5'
8954 5' -59.4 NC_002512.2 + 139663 0.67 0.802209
Target:  5'- cGUCUC-CCUGUCcgACCGCa-UCUACCUc -3'
miRNA:   3'- -UAGAGcGGGCAG--UGGCGgcAGAUGGA- -5'
8954 5' -59.4 NC_002512.2 + 123103 0.67 0.802209
Target:  5'- gGUCcggCGgaaCCGUCccGCCGCCGUCggcgGCCg -3'
miRNA:   3'- -UAGa--GCg--GGCAG--UGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 9673 0.67 0.793632
Target:  5'- -aCUCGuccCCCGg-GCCGCCGUCggGCCc -3'
miRNA:   3'- uaGAGC---GGGCagUGGCGGCAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 224886 0.67 0.793632
Target:  5'- -cCUCGCCgGcCGCCuucgacccguucGCCGUCUGCa- -3'
miRNA:   3'- uaGAGCGGgCaGUGG------------CGGCAGAUGga -5'
8954 5' -59.4 NC_002512.2 + 27364 0.67 0.793632
Target:  5'- cGUC-CGCCCc-CGCCGCCGcCUccGCCUc -3'
miRNA:   3'- -UAGaGCGGGcaGUGGCGGCaGA--UGGA- -5'
8954 5' -59.4 NC_002512.2 + 43071 0.67 0.784923
Target:  5'- uUCUCGCCgGUUAuCCGgC-UCUACCg -3'
miRNA:   3'- uAGAGCGGgCAGU-GGCgGcAGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.