miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8954 5' -59.4 NC_002512.2 + 223359 0.67 0.784923
Target:  5'- uUCUcCGCCCGcCGauCCGgCGUCUAUCa -3'
miRNA:   3'- uAGA-GCGGGCaGU--GGCgGCAGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 173694 0.67 0.784045
Target:  5'- ----aGUUCGUCACCGCCGUCcugggacUGCCc -3'
miRNA:   3'- uagagCGGGCAGUGGCGGCAG-------AUGGa -5'
8954 5' -59.4 NC_002512.2 + 41310 0.68 0.776089
Target:  5'- gGUCgaCGCagaccgagaagUCGUCGCCGCCGgagCUGCCc -3'
miRNA:   3'- -UAGa-GCG-----------GGCAGUGGCGGCa--GAUGGa -5'
8954 5' -59.4 NC_002512.2 + 124095 0.68 0.776089
Target:  5'- cGUCuUCGCCC-UCGCCGUCGaccaUGCCg -3'
miRNA:   3'- -UAG-AGCGGGcAGUGGCGGCag--AUGGa -5'
8954 5' -59.4 NC_002512.2 + 99042 0.68 0.776088
Target:  5'- -cCUCGCCCG--ACCGCCGguaCUcgACCg -3'
miRNA:   3'- uaGAGCGGGCagUGGCGGCa--GA--UGGa -5'
8954 5' -59.4 NC_002512.2 + 222521 0.68 0.776088
Target:  5'- ---cCGCCCGcCgcgGCCGCCGUCgcgguggGCCg -3'
miRNA:   3'- uagaGCGGGCaG---UGGCGGCAGa------UGGa -5'
8954 5' -59.4 NC_002512.2 + 129609 0.68 0.776088
Target:  5'- -aCUCGCCCcgcUCGCCGagcuCCGUCU-CCUc -3'
miRNA:   3'- uaGAGCGGGc--AGUGGC----GGCAGAuGGA- -5'
8954 5' -59.4 NC_002512.2 + 140211 0.68 0.767137
Target:  5'- cAUCUCGCCC--CGCCGCCuUCgcACCg -3'
miRNA:   3'- -UAGAGCGGGcaGUGGCGGcAGa-UGGa -5'
8954 5' -59.4 NC_002512.2 + 155067 0.68 0.767137
Target:  5'- --gUUGUUCGUcCGCCGCCG-CUGCCg -3'
miRNA:   3'- uagAGCGGGCA-GUGGCGGCaGAUGGa -5'
8954 5' -59.4 NC_002512.2 + 189230 0.68 0.767137
Target:  5'- gAUC-CGUCCGUCGCCGUcgcggaCGUC-ACCg -3'
miRNA:   3'- -UAGaGCGGGCAGUGGCG------GCAGaUGGa -5'
8954 5' -59.4 NC_002512.2 + 112373 0.68 0.748915
Target:  5'- uGUC-CGUCC-UCACCGCCGUCaGCg- -3'
miRNA:   3'- -UAGaGCGGGcAGUGGCGGCAGaUGga -5'
8954 5' -59.4 NC_002512.2 + 69231 0.68 0.748915
Target:  5'- --gUC-CCCGUCGCCGCgGUCgauCCa -3'
miRNA:   3'- uagAGcGGGCAGUGGCGgCAGau-GGa -5'
8954 5' -59.4 NC_002512.2 + 105614 0.68 0.739659
Target:  5'- ---aCGCCCGgguccgaCGCCGCCGUCgggugcACCg -3'
miRNA:   3'- uagaGCGGGCa------GUGGCGGCAGa-----UGGa -5'
8954 5' -59.4 NC_002512.2 + 59092 0.68 0.739659
Target:  5'- -gCUC-CCC-UCGCCGCCGUCgucgcGCCg -3'
miRNA:   3'- uaGAGcGGGcAGUGGCGGCAGa----UGGa -5'
8954 5' -59.4 NC_002512.2 + 189254 0.68 0.730319
Target:  5'- cUCguaCGCUCGUCACCGCCGcguugacgcUCU-CCa -3'
miRNA:   3'- uAGa--GCGGGCAGUGGCGGC---------AGAuGGa -5'
8954 5' -59.4 NC_002512.2 + 106704 0.69 0.7209
Target:  5'- -cCUCGuCCCGUC-CCGCC-UCgGCCUc -3'
miRNA:   3'- uaGAGC-GGGCAGuGGCGGcAGaUGGA- -5'
8954 5' -59.4 NC_002512.2 + 131717 0.69 0.7209
Target:  5'- gGUCgccgCGCCCGUCcagacgcggcgACCGCCGgggCgggcgGCCg -3'
miRNA:   3'- -UAGa---GCGGGCAG-----------UGGCGGCa--Ga----UGGa -5'
8954 5' -59.4 NC_002512.2 + 184463 0.69 0.701864
Target:  5'- --gUCGCCgCGgccggCGCCGCCGUCgagcGCCc -3'
miRNA:   3'- uagAGCGG-GCa----GUGGCGGCAGa---UGGa -5'
8954 5' -59.4 NC_002512.2 + 17308 0.69 0.692262
Target:  5'- --aUCGCgUCGUCGCCGCCGUCg---- -3'
miRNA:   3'- uagAGCG-GGCAGUGGCGGCAGaugga -5'
8954 5' -59.4 NC_002512.2 + 80165 0.69 0.692262
Target:  5'- -cCUCG-CUGUCGCCGUCGUCgcugcUGCCg -3'
miRNA:   3'- uaGAGCgGGCAGUGGCGGCAG-----AUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.