Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8955 | 3' | -56.8 | NC_002512.2 | + | 6407 | 0.69 | 0.845539 |
Target: 5'- gGgaGGCGGCGGCGGcGCUGgggaaggcggcCGUCu -3' miRNA: 3'- gCgaCCGCCGCUGUCaCGAUa----------GCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 154826 | 0.69 | 0.82971 |
Target: 5'- aGC-GGCGGCGGCAGUagUGUCGg-- -3' miRNA: 3'- gCGaCCGCCGCUGUCAcgAUAGCagc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 179643 | 0.68 | 0.881859 |
Target: 5'- aGCUGGauCGGCGACGGcgacGCgcUUGUCa -3' miRNA: 3'- gCGACC--GCCGCUGUCa---CGauAGCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 201705 | 0.68 | 0.888524 |
Target: 5'- uGCgGGauCGGCGGCGGcGUcGUCGUCGc -3' miRNA: 3'- gCGaCC--GCCGCUGUCaCGaUAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 26406 | 0.68 | 0.860647 |
Target: 5'- uGCUGGCGaCG-CAGaUGCUGUCGa-- -3' miRNA: 3'- gCGACCGCcGCuGUC-ACGAUAGCagc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 79821 | 0.68 | 0.867917 |
Target: 5'- gGC-GGCGGCGGCGGUccccccucccGCcccGUCGUCc -3' miRNA: 3'- gCGaCCGCCGCUGUCA----------CGa--UAGCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 36441 | 0.68 | 0.881859 |
Target: 5'- cCGCUcccgccaccGGCGGCcGCGGUcgcGCUcguaGUCGUCGu -3' miRNA: 3'- -GCGA---------CCGCCGcUGUCA---CGA----UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 51928 | 0.68 | 0.887208 |
Target: 5'- aCGCUGGCGG-GACugaucacccaGCUGUCGgacgCGg -3' miRNA: 3'- -GCGACCGCCgCUGuca-------CGAUAGCa---GC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 202363 | 0.68 | 0.888524 |
Target: 5'- uGUccgGGCGGCGGCGG----GUCGUCGa -3' miRNA: 3'- gCGa--CCGCCGCUGUCacgaUAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 191273 | 0.68 | 0.860647 |
Target: 5'- gGgaGGCGGCGACGGggaggGCgg-CGgggCGg -3' miRNA: 3'- gCgaCCGCCGCUGUCa----CGauaGCa--GC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 108754 | 0.68 | 0.874989 |
Target: 5'- gGCagUGcGCGGCG-CGGgcgauccgGCUGUCGUCa -3' miRNA: 3'- gCG--AC-CGCCGCuGUCa-------CGAUAGCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 126776 | 0.68 | 0.874989 |
Target: 5'- gGCggcGGCGGCGACGcGUGCcgcgccCGUCc -3' miRNA: 3'- gCGa--CCGCCGCUGU-CACGaua---GCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 12390 | 0.68 | 0.860647 |
Target: 5'- uCGCcuucgGGCGGCGGCGGcgGCgccgggAUCG-CGa -3' miRNA: 3'- -GCGa----CCGCCGCUGUCa-CGa-----UAGCaGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 190324 | 0.67 | 0.918636 |
Target: 5'- uGCUGGgGGaCGACGG-GU--UCGUCu -3' miRNA: 3'- gCGACCgCC-GCUGUCaCGauAGCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 217797 | 0.67 | 0.907244 |
Target: 5'- gGCUGGCGGauCGGCGucGCcgucccgAUCGUCGa -3' miRNA: 3'- gCGACCGCC--GCUGUcaCGa------UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 150946 | 0.67 | 0.901219 |
Target: 5'- gGCUccGGCGGCcgcggacucggaGGCGG-GCUcgCGUCGc -3' miRNA: 3'- gCGA--CCGCCG------------CUGUCaCGAuaGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 71140 | 0.67 | 0.924 |
Target: 5'- aGCagGGCGGCcAC-GUGUUccugGUCGUCGa -3' miRNA: 3'- gCGa-CCGCCGcUGuCACGA----UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 22992 | 0.67 | 0.907244 |
Target: 5'- aCGCgGGCGGCGcUGGUGacCUAccCGUCGg -3' miRNA: 3'- -GCGaCCGCCGCuGUCAC--GAUa-GCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 47015 | 0.67 | 0.907244 |
Target: 5'- uGCUGGCGGCGG-AGcUGCUGggCGa-- -3' miRNA: 3'- gCGACCGCCGCUgUC-ACGAUa-GCagc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 20299 | 0.67 | 0.907244 |
Target: 5'- aCG-UGGCGGUGACcGUGCcGgacgaggagcUCGUCGa -3' miRNA: 3'- -GCgACCGCCGCUGuCACGaU----------AGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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