Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8955 | 3' | -56.8 | NC_002512.2 | + | 80676 | 0.72 | 0.674384 |
Target: 5'- cCGCggcGGCGGCGACGGggGCgagcggCGUCc -3' miRNA: 3'- -GCGa--CCGCCGCUGUCa-CGaua---GCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 81980 | 0.66 | 0.934062 |
Target: 5'- gGgUGGUGGCGGCGGggGCgucUCGggggCGg -3' miRNA: 3'- gCgACCGCCGCUGUCa-CGau-AGCa---GC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 83816 | 0.76 | 0.454176 |
Target: 5'- gCGCcGGCGGCGGCGGcuccggGCccggGUCGUCGc -3' miRNA: 3'- -GCGaCCGCCGCUGUCa-----CGa---UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 86942 | 0.67 | 0.91305 |
Target: 5'- uCGgaGGagaCGGCGAUGGUgacGCUGUCgGUCGa -3' miRNA: 3'- -GCgaCC---GCCGCUGUCA---CGAUAG-CAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 88273 | 0.67 | 0.918636 |
Target: 5'- ---aGGUGGCGGCAG-GCg--UGUCGg -3' miRNA: 3'- gcgaCCGCCGCUGUCaCGauaGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 89233 | 0.66 | 0.93876 |
Target: 5'- uGUUGGUgacGGCGACGGaGCUcUCG-CGg -3' miRNA: 3'- gCGACCG---CCGCUGUCaCGAuAGCaGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 92009 | 0.66 | 0.943238 |
Target: 5'- uCGCcGGCGGCGGacucGCgggCGUCGg -3' miRNA: 3'- -GCGaCCGCCGCUgucaCGauaGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 97421 | 0.69 | 0.853186 |
Target: 5'- gGCUGGCcaCGAUGGUGCUGgcgcUGUCGc -3' miRNA: 3'- gCGACCGccGCUGUCACGAUa---GCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 108754 | 0.68 | 0.874989 |
Target: 5'- gGCagUGcGCGGCG-CGGgcgauccgGCUGUCGUCa -3' miRNA: 3'- gCG--AC-CGCCGCuGUCa-------CGAUAGCAGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 110049 | 0.71 | 0.722815 |
Target: 5'- ---aGGCGGCGGCGGUGCgcAUCGcCu -3' miRNA: 3'- gcgaCCGCCGCUGUCACGa-UAGCaGc -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 113726 | 0.67 | 0.893064 |
Target: 5'- aCGCgGGCGGCGAUcugcgggccgaGGUGCgcggUcauggagccgaccaGUCGUCGa -3' miRNA: 3'- -GCGaCCGCCGCUG-----------UCACG----A--------------UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 114487 | 0.73 | 0.644875 |
Target: 5'- -aCUGGaCGGCGACGGagcUGCUGUCGaagaUCGa -3' miRNA: 3'- gcGACC-GCCGCUGUC---ACGAUAGC----AGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 116889 | 0.66 | 0.951539 |
Target: 5'- gGCUGGCGGCGGggcCGGgGCgggcUCcUCGg -3' miRNA: 3'- gCGACCGCCGCU---GUCaCGau--AGcAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 117435 | 0.66 | 0.947497 |
Target: 5'- aCGCUGGCcGUGAugcacCAGaaGCUGUCGcCGg -3' miRNA: 3'- -GCGACCGcCGCU-----GUCa-CGAUAGCaGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 118610 | 0.69 | 0.853186 |
Target: 5'- cCGC-GGCGGCcgacauggagacGACGGUGCUGUgcaCGuUCGa -3' miRNA: 3'- -GCGaCCGCCG------------CUGUCACGAUA---GC-AGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 120229 | 0.74 | 0.576017 |
Target: 5'- -aCUGGUGGCGACGG-GCcUGUCGUgGa -3' miRNA: 3'- gcGACCGCCGCUGUCaCG-AUAGCAgC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 121201 | 0.69 | 0.837711 |
Target: 5'- gCGCUGGC--CGACAGcGCccucGUCGUCGg -3' miRNA: 3'- -GCGACCGccGCUGUCaCGa---UAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 122059 | 0.69 | 0.845539 |
Target: 5'- gGCUGGCGGUGAgCAG-GCUGaaGUgGc -3' miRNA: 3'- gCGACCGCCGCU-GUCaCGAUagCAgC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 126449 | 0.67 | 0.894978 |
Target: 5'- gGCgacGGCGGCGGCcgccuuGUucGCcGUCGUCGu -3' miRNA: 3'- gCGa--CCGCCGCUGu-----CA--CGaUAGCAGC- -5' |
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8955 | 3' | -56.8 | NC_002512.2 | + | 126776 | 0.68 | 0.874989 |
Target: 5'- gGCggcGGCGGCGACGcGUGCcgcgccCGUCc -3' miRNA: 3'- gCGa--CCGCCGCUGU-CACGaua---GCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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