miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 3' -56.8 NC_002512.2 + 146643 0.66 0.934062
Target:  5'- uGCUGGCGGCGACgAGgagggagGCU-UCccCGg -3'
miRNA:   3'- gCGACCGCCGCUG-UCa------CGAuAGcaGC- -5'
8955 3' -56.8 NC_002512.2 + 146100 0.69 0.845539
Target:  5'- aCGCgguccucGGCGGCGGCGGcgGCgc-CGUCu -3'
miRNA:   3'- -GCGa------CCGCCGCUGUCa-CGauaGCAGc -5'
8955 3' -56.8 NC_002512.2 + 131679 0.66 0.946242
Target:  5'- cCGCgagGGCGGUGAgcccggagcgcaggUAGUGCUGcUCGgagaCGa -3'
miRNA:   3'- -GCGa--CCGCCGCU--------------GUCACGAU-AGCa---GC- -5'
8955 3' -56.8 NC_002512.2 + 128811 0.7 0.760305
Target:  5'- aGCgagaGGuCGGCGGCGGcGCUGUCGgCGc -3'
miRNA:   3'- gCGa---CC-GCCGCUGUCaCGAUAGCaGC- -5'
8955 3' -56.8 NC_002512.2 + 126776 0.68 0.874989
Target:  5'- gGCggcGGCGGCGACGcGUGCcgcgccCGUCc -3'
miRNA:   3'- gCGa--CCGCCGCUGU-CACGaua---GCAGc -5'
8955 3' -56.8 NC_002512.2 + 126449 0.67 0.894978
Target:  5'- gGCgacGGCGGCGGCcgccuuGUucGCcGUCGUCGu -3'
miRNA:   3'- gCGa--CCGCCGCUGu-----CA--CGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 122059 0.69 0.845539
Target:  5'- gGCUGGCGGUGAgCAG-GCUGaaGUgGc -3'
miRNA:   3'- gCGACCGCCGCU-GUCaCGAUagCAgC- -5'
8955 3' -56.8 NC_002512.2 + 121201 0.69 0.837711
Target:  5'- gCGCUGGC--CGACAGcGCccucGUCGUCGg -3'
miRNA:   3'- -GCGACCGccGCUGUCaCGa---UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 120229 0.74 0.576017
Target:  5'- -aCUGGUGGCGACGG-GCcUGUCGUgGa -3'
miRNA:   3'- gcGACCGCCGCUGUCaCG-AUAGCAgC- -5'
8955 3' -56.8 NC_002512.2 + 118610 0.69 0.853186
Target:  5'- cCGC-GGCGGCcgacauggagacGACGGUGCUGUgcaCGuUCGa -3'
miRNA:   3'- -GCGaCCGCCG------------CUGUCACGAUA---GC-AGC- -5'
8955 3' -56.8 NC_002512.2 + 117435 0.66 0.947497
Target:  5'- aCGCUGGCcGUGAugcacCAGaaGCUGUCGcCGg -3'
miRNA:   3'- -GCGACCGcCGCU-----GUCa-CGAUAGCaGC- -5'
8955 3' -56.8 NC_002512.2 + 116889 0.66 0.951539
Target:  5'- gGCUGGCGGCGGggcCGGgGCgggcUCcUCGg -3'
miRNA:   3'- gCGACCGCCGCU---GUCaCGau--AGcAGC- -5'
8955 3' -56.8 NC_002512.2 + 114487 0.73 0.644875
Target:  5'- -aCUGGaCGGCGACGGagcUGCUGUCGaagaUCGa -3'
miRNA:   3'- gcGACC-GCCGCUGUC---ACGAUAGC----AGC- -5'
8955 3' -56.8 NC_002512.2 + 113726 0.67 0.893064
Target:  5'- aCGCgGGCGGCGAUcugcgggccgaGGUGCgcggUcauggagccgaccaGUCGUCGa -3'
miRNA:   3'- -GCGaCCGCCGCUG-----------UCACG----A--------------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 110049 0.71 0.722815
Target:  5'- ---aGGCGGCGGCGGUGCgcAUCGcCu -3'
miRNA:   3'- gcgaCCGCCGCUGUCACGa-UAGCaGc -5'
8955 3' -56.8 NC_002512.2 + 108754 0.68 0.874989
Target:  5'- gGCagUGcGCGGCG-CGGgcgauccgGCUGUCGUCa -3'
miRNA:   3'- gCG--AC-CGCCGCuGUCa-------CGAUAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 97421 0.69 0.853186
Target:  5'- gGCUGGCcaCGAUGGUGCUGgcgcUGUCGc -3'
miRNA:   3'- gCGACCGccGCUGUCACGAUa---GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 92009 0.66 0.943238
Target:  5'- uCGCcGGCGGCGGacucGCgggCGUCGg -3'
miRNA:   3'- -GCGaCCGCCGCUgucaCGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 89233 0.66 0.93876
Target:  5'- uGUUGGUgacGGCGACGGaGCUcUCG-CGg -3'
miRNA:   3'- gCGACCG---CCGCUGUCaCGAuAGCaGC- -5'
8955 3' -56.8 NC_002512.2 + 88273 0.67 0.918636
Target:  5'- ---aGGUGGCGGCAG-GCg--UGUCGg -3'
miRNA:   3'- gcgaCCGCCGCUGUCaCGauaGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.