miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 3' -56.8 NC_002512.2 + 224975 0.72 0.691963
Target:  5'- cCGCUgGGCGGCGGCGGcgGCgcccucuuccCGUCGc -3'
miRNA:   3'- -GCGA-CCGCCGCUGUCa-CGaua-------GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 219021 0.66 0.947081
Target:  5'- uGCU-GCuGCGAC-GUGCUggucuacGUCGUCGg -3'
miRNA:   3'- gCGAcCGcCGCUGuCACGA-------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 217797 0.67 0.907244
Target:  5'- gGCUGGCGGauCGGCGucGCcgucccgAUCGUCGa -3'
miRNA:   3'- gCGACCGCC--GCUGUcaCGa------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 213370 1.1 0.003698
Target:  5'- gCGCUGGCGGCGACAGUGCUAUCGUCGg -3'
miRNA:   3'- -GCGACCGCCGCUGUCACGAUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 212154 0.66 0.951539
Target:  5'- gGCgGGCacuGGCGGCGGgacgGCUGggcCGUCc -3'
miRNA:   3'- gCGaCCG---CCGCUGUCa---CGAUa--GCAGc -5'
8955 3' -56.8 NC_002512.2 + 202363 0.68 0.888524
Target:  5'- uGUccgGGCGGCGGCGG----GUCGUCGa -3'
miRNA:   3'- gCGa--CCGCCGCUGUCacgaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 201705 0.68 0.888524
Target:  5'- uGCgGGauCGGCGGCGGcGUcGUCGUCGc -3'
miRNA:   3'- gCGaCC--GCCGCUGUCaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 191273 0.68 0.860647
Target:  5'- gGgaGGCGGCGACGGggaggGCgg-CGgggCGg -3'
miRNA:   3'- gCgaCCGCCGCUGUCa----CGauaGCa--GC- -5'
8955 3' -56.8 NC_002512.2 + 190324 0.67 0.918636
Target:  5'- uGCUGGgGGaCGACGG-GU--UCGUCu -3'
miRNA:   3'- gCGACCgCC-GCUGUCaCGauAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 188648 0.76 0.44536
Target:  5'- gCGCcGGCGGCGGCGGcgGCccGUCGUCc -3'
miRNA:   3'- -GCGaCCGCCGCUGUCa-CGa-UAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 188564 0.67 0.901219
Target:  5'- aGCUccGGCGGCGACgacuucucGGUcuGCgucgaccagGUCGUCGa -3'
miRNA:   3'- gCGA--CCGCCGCUG--------UCA--CGa--------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 179643 0.68 0.881859
Target:  5'- aGCUGGauCGGCGACGGcgacGCgcUUGUCa -3'
miRNA:   3'- gCGACC--GCCGCUGUCa---CGauAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 179563 0.67 0.918636
Target:  5'- gGCUcgaucuucGGCGGCGGCAGgaucGCaucuugggCGUCGa -3'
miRNA:   3'- gCGA--------CCGCCGCUGUCa---CGaua-----GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 179485 0.67 0.924
Target:  5'- uGCUucGGCGGCGuCGucGCcAUCGUCGu -3'
miRNA:   3'- gCGA--CCGCCGCuGUcaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 175278 0.71 0.71995
Target:  5'- aGCUGGCGGCcGCguacacguacucggGGUGCag-CGUCGa -3'
miRNA:   3'- gCGACCGCCGcUG--------------UCACGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 161712 0.67 0.918636
Target:  5'- aCGC-GGcCGGCGACGGg---AUCGUCu -3'
miRNA:   3'- -GCGaCC-GCCGCUGUCacgaUAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 160837 0.67 0.894978
Target:  5'- gGCgGGCGGcCGGCGGcGCUGggcgcaGUCGc -3'
miRNA:   3'- gCGaCCGCC-GCUGUCaCGAUag----CAGC- -5'
8955 3' -56.8 NC_002512.2 + 158786 0.7 0.760305
Target:  5'- gCGCUGGUGGCc-CGGgGC-GUCGUCGa -3'
miRNA:   3'- -GCGACCGCCGcuGUCaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 154826 0.69 0.82971
Target:  5'- aGC-GGCGGCGGCAGUagUGUCGg-- -3'
miRNA:   3'- gCGaCCGCCGCUGUCAcgAUAGCagc -5'
8955 3' -56.8 NC_002512.2 + 150946 0.67 0.901219
Target:  5'- gGCUccGGCGGCcgcggacucggaGGCGG-GCUcgCGUCGc -3'
miRNA:   3'- gCGA--CCGCCG------------CUGUCaCGAuaGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.