miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 3' -56.8 NC_002512.2 + 213370 1.1 0.003698
Target:  5'- gCGCUGGCGGCGACAGUGCUAUCGUCGg -3'
miRNA:   3'- -GCGACCGCCGCUGUCACGAUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 188648 0.76 0.44536
Target:  5'- gCGCcGGCGGCGGCGGcgGCccGUCGUCc -3'
miRNA:   3'- -GCGaCCGCCGCUGUCa-CGa-UAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 83816 0.76 0.454176
Target:  5'- gCGCcGGCGGCGGCGGcuccggGCccggGUCGUCGc -3'
miRNA:   3'- -GCGaCCGCCGCUGUCa-----CGa---UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 26700 0.75 0.518337
Target:  5'- uGCUGGCGGUGACcugGCUggCGUCc -3'
miRNA:   3'- gCGACCGCCGCUGucaCGAuaGCAGc -5'
8955 3' -56.8 NC_002512.2 + 120229 0.74 0.576017
Target:  5'- -aCUGGUGGCGACGG-GCcUGUCGUgGa -3'
miRNA:   3'- gcGACCGCCGCUGUCaCG-AUAGCAgC- -5'
8955 3' -56.8 NC_002512.2 + 114487 0.73 0.644875
Target:  5'- -aCUGGaCGGCGACGGagcUGCUGUCGaagaUCGa -3'
miRNA:   3'- gcGACC-GCCGCUGUC---ACGAUAGC----AGC- -5'
8955 3' -56.8 NC_002512.2 + 80676 0.72 0.674384
Target:  5'- cCGCggcGGCGGCGACGGggGCgagcggCGUCc -3'
miRNA:   3'- -GCGa--CCGCCGCUGUCa-CGaua---GCAGc -5'
8955 3' -56.8 NC_002512.2 + 224975 0.72 0.691963
Target:  5'- cCGCUgGGCGGCGGCGGcgGCgcccucuuccCGUCGc -3'
miRNA:   3'- -GCGA-CCGCCGCUGUCa-CGaua-------GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 175278 0.71 0.71995
Target:  5'- aGCUGGCGGCcGCguacacguacucggGGUGCag-CGUCGa -3'
miRNA:   3'- gCGACCGCCGcUG--------------UCACGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 110049 0.71 0.722815
Target:  5'- ---aGGCGGCGGCGGUGCgcAUCGcCu -3'
miRNA:   3'- gcgaCCGCCGCUGUCACGa-UAGCaGc -5'
8955 3' -56.8 NC_002512.2 + 158786 0.7 0.760305
Target:  5'- gCGCUGGUGGCc-CGGgGC-GUCGUCGa -3'
miRNA:   3'- -GCGACCGCCGcuGUCaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 128811 0.7 0.760305
Target:  5'- aGCgagaGGuCGGCGGCGGcGCUGUCGgCGc -3'
miRNA:   3'- gCGa---CC-GCCGCUGUCaCGAUAGCaGC- -5'
8955 3' -56.8 NC_002512.2 + 33195 0.7 0.787343
Target:  5'- gGCUGGCGG--ACGGUGCcgcUCGUCc -3'
miRNA:   3'- gCGACCGCCgcUGUCACGau-AGCAGc -5'
8955 3' -56.8 NC_002512.2 + 75288 0.69 0.813214
Target:  5'- gGCggcGGCGGCGACGaUGCcgcCGUCGc -3'
miRNA:   3'- gCGa--CCGCCGCUGUcACGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 154826 0.69 0.82971
Target:  5'- aGC-GGCGGCGGCAGUagUGUCGg-- -3'
miRNA:   3'- gCGaCCGCCGCUGUCAcgAUAGCagc -5'
8955 3' -56.8 NC_002512.2 + 34627 0.69 0.837711
Target:  5'- aGCUGuaacGCGGCGAgacaCAGgagGCU-UCGUCGg -3'
miRNA:   3'- gCGAC----CGCCGCU----GUCa--CGAuAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 121201 0.69 0.837711
Target:  5'- gCGCUGGC--CGACAGcGCccucGUCGUCGg -3'
miRNA:   3'- -GCGACCGccGCUGUCaCGa---UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 146100 0.69 0.845539
Target:  5'- aCGCgguccucGGCGGCGGCGGcgGCgc-CGUCu -3'
miRNA:   3'- -GCGa------CCGCCGCUGUCa-CGauaGCAGc -5'
8955 3' -56.8 NC_002512.2 + 6407 0.69 0.845539
Target:  5'- gGgaGGCGGCGGCGGcGCUGgggaaggcggcCGUCu -3'
miRNA:   3'- gCgaCCGCCGCUGUCaCGAUa----------GCAGc -5'
8955 3' -56.8 NC_002512.2 + 122059 0.69 0.845539
Target:  5'- gGCUGGCGGUGAgCAG-GCUGaaGUgGc -3'
miRNA:   3'- gCGACCGCCGCU-GUCaCGAUagCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.