miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 3' -56.8 NC_002512.2 + 116889 0.66 0.951539
Target:  5'- gGCUGGCGGCGGggcCGGgGCgggcUCcUCGg -3'
miRNA:   3'- gCGACCGCCGCU---GUCaCGau--AGcAGC- -5'
8955 3' -56.8 NC_002512.2 + 212154 0.66 0.951539
Target:  5'- gGCgGGCacuGGCGGCGGgacgGCUGggcCGUCc -3'
miRNA:   3'- gCGaCCG---CCGCUGUCa---CGAUa--GCAGc -5'
8955 3' -56.8 NC_002512.2 + 80643 0.66 0.947497
Target:  5'- cCGUccGCGGCGGCGGcGCcggGUcCGUCGg -3'
miRNA:   3'- -GCGacCGCCGCUGUCaCGa--UA-GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 117435 0.66 0.947497
Target:  5'- aCGCUGGCcGUGAugcacCAGaaGCUGUCGcCGg -3'
miRNA:   3'- -GCGACCGcCGCU-----GUCa-CGAUAGCaGC- -5'
8955 3' -56.8 NC_002512.2 + 219021 0.66 0.947081
Target:  5'- uGCU-GCuGCGAC-GUGCUggucuacGUCGUCGg -3'
miRNA:   3'- gCGAcCGcCGCUGuCACGA-------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 131679 0.66 0.946242
Target:  5'- cCGCgagGGCGGUGAgcccggagcgcaggUAGUGCUGcUCGgagaCGa -3'
miRNA:   3'- -GCGa--CCGCCGCU--------------GUCACGAU-AGCa---GC- -5'
8955 3' -56.8 NC_002512.2 + 92009 0.66 0.943238
Target:  5'- uCGCcGGCGGCGGacucGCgggCGUCGg -3'
miRNA:   3'- -GCGaCCGCCGCUgucaCGauaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 64798 0.66 0.93876
Target:  5'- uGCUGGCGccaGCGACGG-GCa--CGUCc -3'
miRNA:   3'- gCGACCGC---CGCUGUCaCGauaGCAGc -5'
8955 3' -56.8 NC_002512.2 + 15328 0.66 0.93876
Target:  5'- uCGCccUGGUcgcGGUGACAGUGCUcgCaGUUa -3'
miRNA:   3'- -GCG--ACCG---CCGCUGUCACGAuaG-CAGc -5'
8955 3' -56.8 NC_002512.2 + 89233 0.66 0.93876
Target:  5'- uGUUGGUgacGGCGACGGaGCUcUCG-CGg -3'
miRNA:   3'- gCGACCG---CCGCUGUCaCGAuAGCaGC- -5'
8955 3' -56.8 NC_002512.2 + 81980 0.66 0.934062
Target:  5'- gGgUGGUGGCGGCGGggGCgucUCGggggCGg -3'
miRNA:   3'- gCgACCGCCGCUGUCa-CGau-AGCa---GC- -5'
8955 3' -56.8 NC_002512.2 + 146643 0.66 0.934062
Target:  5'- uGCUGGCGGCGACgAGgagggagGCU-UCccCGg -3'
miRNA:   3'- gCGACCGCCGCUG-UCa------CGAuAGcaGC- -5'
8955 3' -56.8 NC_002512.2 + 22577 0.66 0.934062
Target:  5'- uGCUGGUgaacggcucggaGGCcACGGUGCUGgacaCGUCc -3'
miRNA:   3'- gCGACCG------------CCGcUGUCACGAUa---GCAGc -5'
8955 3' -56.8 NC_002512.2 + 75352 0.66 0.929142
Target:  5'- gCGgaGGCGGCGGacCGGUaGCgaucuUCGUCc -3'
miRNA:   3'- -GCgaCCGCCGCU--GUCA-CGau---AGCAGc -5'
8955 3' -56.8 NC_002512.2 + 56303 0.66 0.929142
Target:  5'- uGCUGGCGGCGcCGGaGCUcggCG-Ca -3'
miRNA:   3'- gCGACCGCCGCuGUCaCGAua-GCaGc -5'
8955 3' -56.8 NC_002512.2 + 179485 0.67 0.924
Target:  5'- uGCUucGGCGGCGuCGucGCcAUCGUCGu -3'
miRNA:   3'- gCGA--CCGCCGCuGUcaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 71140 0.67 0.924
Target:  5'- aGCagGGCGGCcAC-GUGUUccugGUCGUCGa -3'
miRNA:   3'- gCGa-CCGCCGcUGuCACGA----UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 179563 0.67 0.918636
Target:  5'- gGCUcgaucuucGGCGGCGGCAGgaucGCaucuugggCGUCGa -3'
miRNA:   3'- gCGA--------CCGCCGCUGUCa---CGaua-----GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 161712 0.67 0.918636
Target:  5'- aCGC-GGcCGGCGACGGg---AUCGUCu -3'
miRNA:   3'- -GCGaCC-GCCGCUGUCacgaUAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 88273 0.67 0.918636
Target:  5'- ---aGGUGGCGGCAG-GCg--UGUCGg -3'
miRNA:   3'- gcgaCCGCCGCUGUCaCGauaGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.