miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8955 3' -56.8 NC_002512.2 + 179563 0.67 0.918636
Target:  5'- gGCUcgaucuucGGCGGCGGCAGgaucGCaucuugggCGUCGa -3'
miRNA:   3'- gCGA--------CCGCCGCUGUCa---CGaua-----GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 86942 0.67 0.91305
Target:  5'- uCGgaGGagaCGGCGAUGGUgacGCUGUCgGUCGa -3'
miRNA:   3'- -GCgaCC---GCCGCUGUCA---CGAUAG-CAGC- -5'
8955 3' -56.8 NC_002512.2 + 20299 0.67 0.907244
Target:  5'- aCG-UGGCGGUGACcGUGCcGgacgaggagcUCGUCGa -3'
miRNA:   3'- -GCgACCGCCGCUGuCACGaU----------AGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 22992 0.67 0.907244
Target:  5'- aCGCgGGCGGCGcUGGUGacCUAccCGUCGg -3'
miRNA:   3'- -GCGaCCGCCGCuGUCAC--GAUa-GCAGC- -5'
8955 3' -56.8 NC_002512.2 + 47015 0.67 0.907244
Target:  5'- uGCUGGCGGCGG-AGcUGCUGggCGa-- -3'
miRNA:   3'- gCGACCGCCGCUgUC-ACGAUa-GCagc -5'
8955 3' -56.8 NC_002512.2 + 217797 0.67 0.907244
Target:  5'- gGCUGGCGGauCGGCGucGCcgucccgAUCGUCGa -3'
miRNA:   3'- gCGACCGCC--GCUGUcaCGa------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 188564 0.67 0.901219
Target:  5'- aGCUccGGCGGCGACgacuucucGGUcuGCgucgaccagGUCGUCGa -3'
miRNA:   3'- gCGA--CCGCCGCUG--------UCA--CGa--------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 150946 0.67 0.901219
Target:  5'- gGCUccGGCGGCcgcggacucggaGGCGG-GCUcgCGUCGc -3'
miRNA:   3'- gCGA--CCGCCG------------CUGUCaCGAuaGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 126449 0.67 0.894978
Target:  5'- gGCgacGGCGGCGGCcgccuuGUucGCcGUCGUCGu -3'
miRNA:   3'- gCGa--CCGCCGCUGu-----CA--CGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 160837 0.67 0.894978
Target:  5'- gGCgGGCGGcCGGCGGcGCUGggcgcaGUCGc -3'
miRNA:   3'- gCGaCCGCC-GCUGUCaCGAUag----CAGC- -5'
8955 3' -56.8 NC_002512.2 + 113726 0.67 0.893064
Target:  5'- aCGCgGGCGGCGAUcugcgggccgaGGUGCgcggUcauggagccgaccaGUCGUCGa -3'
miRNA:   3'- -GCGaCCGCCGCUG-----------UCACG----A--------------UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 202363 0.68 0.888524
Target:  5'- uGUccgGGCGGCGGCGG----GUCGUCGa -3'
miRNA:   3'- gCGa--CCGCCGCUGUCacgaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 201705 0.68 0.888524
Target:  5'- uGCgGGauCGGCGGCGGcGUcGUCGUCGc -3'
miRNA:   3'- gCGaCC--GCCGCUGUCaCGaUAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 51928 0.68 0.887208
Target:  5'- aCGCUGGCGG-GACugaucacccaGCUGUCGgacgCGg -3'
miRNA:   3'- -GCGACCGCCgCUGuca-------CGAUAGCa---GC- -5'
8955 3' -56.8 NC_002512.2 + 36441 0.68 0.881859
Target:  5'- cCGCUcccgccaccGGCGGCcGCGGUcgcGCUcguaGUCGUCGu -3'
miRNA:   3'- -GCGA---------CCGCCGcUGUCA---CGA----UAGCAGC- -5'
8955 3' -56.8 NC_002512.2 + 179643 0.68 0.881859
Target:  5'- aGCUGGauCGGCGACGGcgacGCgcUUGUCa -3'
miRNA:   3'- gCGACC--GCCGCUGUCa---CGauAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 108754 0.68 0.874989
Target:  5'- gGCagUGcGCGGCG-CGGgcgauccgGCUGUCGUCa -3'
miRNA:   3'- gCG--AC-CGCCGCuGUCa-------CGAUAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 126776 0.68 0.874989
Target:  5'- gGCggcGGCGGCGACGcGUGCcgcgccCGUCc -3'
miRNA:   3'- gCGa--CCGCCGCUGU-CACGaua---GCAGc -5'
8955 3' -56.8 NC_002512.2 + 79821 0.68 0.867917
Target:  5'- gGC-GGCGGCGGCGGUccccccucccGCcccGUCGUCc -3'
miRNA:   3'- gCGaCCGCCGCUGUCA----------CGa--UAGCAGc -5'
8955 3' -56.8 NC_002512.2 + 12390 0.68 0.860647
Target:  5'- uCGCcuucgGGCGGCGGCGGcgGCgccgggAUCG-CGa -3'
miRNA:   3'- -GCGa----CCGCCGCUGUCa-CGa-----UAGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.