Results 101 - 120 of 132 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8956 | 3' | -58.9 | NC_002512.2 | + | 136854 | 0.7 | 0.639962 |
Target: 5'- aGCCGUCC-CGCCuCCGUGUGgaaccacaGCUGCCc -3' miRNA: 3'- -UGGUAGGaGUGG-GGCGCGC--------UGAUGGu -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 158137 | 0.7 | 0.639962 |
Target: 5'- -gCAUCUUCGgCCUcCGCGACUACCu -3' miRNA: 3'- ugGUAGGAGUgGGGcGCGCUGAUGGu -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 155330 | 0.71 | 0.630185 |
Target: 5'- cGCCAaCCUCGCuCCCGUcgccGCGGCcGCCu -3' miRNA: 3'- -UGGUaGGAGUG-GGGCG----CGCUGaUGGu -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 126722 | 0.71 | 0.620409 |
Target: 5'- cUCGUCCUCGCCggGCGCGGCgcgUGCCu -3' miRNA: 3'- uGGUAGGAGUGGggCGCGCUG---AUGGu -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 77179 | 0.71 | 0.620409 |
Target: 5'- uGCCcgCCgCACCCCGaccggggaCGCGACgagACCGg -3' miRNA: 3'- -UGGuaGGaGUGGGGC--------GCGCUGa--UGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 55533 | 0.71 | 0.620409 |
Target: 5'- gGCCAUCCgCAUCCCggcggacgaggGCGCGGCggACCc -3' miRNA: 3'- -UGGUAGGaGUGGGG-----------CGCGCUGa-UGGu -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 119182 | 0.71 | 0.620409 |
Target: 5'- cGCCAUgcagcuggcCCUgGCCCUGCGgCGGCUGCgCGa -3' miRNA: 3'- -UGGUA---------GGAgUGGGGCGC-GCUGAUG-GU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 180424 | 0.71 | 0.610641 |
Target: 5'- gUCGUCCUCggugacggcGCCCCGgGCGGCgcCCGu -3' miRNA: 3'- uGGUAGGAG---------UGGGGCgCGCUGauGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 229819 | 0.71 | 0.591155 |
Target: 5'- cGCC-UCCUCGCgCCCGCGacCGAC-GCCGc -3' miRNA: 3'- -UGGuAGGAGUG-GGGCGC--GCUGaUGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 49524 | 0.71 | 0.591155 |
Target: 5'- -gCAUCggCGCCCUGCGCGACUGgUAc -3' miRNA: 3'- ugGUAGgaGUGGGGCGCGCUGAUgGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 416 | 0.71 | 0.591155 |
Target: 5'- cGCC-UCCUCGCgCCCGCGacCGAC-GCCGc -3' miRNA: 3'- -UGGuAGGAGUG-GGGCGC--GCUGaUGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 130816 | 0.72 | 0.571779 |
Target: 5'- uUCAUCCUCagccaccccaACCCCGCGguCGAgUACCGg -3' miRNA: 3'- uGGUAGGAG----------UGGGGCGC--GCUgAUGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 223493 | 0.72 | 0.571779 |
Target: 5'- cGCCGccUCC-CugCCCGuCGCGACgACCAc -3' miRNA: 3'- -UGGU--AGGaGugGGGC-GCGCUGaUGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 34872 | 0.72 | 0.571779 |
Target: 5'- cGCCGUCgUCGCCgCCGCcGgGACcGCCGu -3' miRNA: 3'- -UGGUAGgAGUGG-GGCG-CgCUGaUGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 28021 | 0.72 | 0.571779 |
Target: 5'- cGCCGUCCUCggaccgcagGCCCCaG-GCGAgCUGCCGg -3' miRNA: 3'- -UGGUAGGAG---------UGGGG-CgCGCU-GAUGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 116824 | 0.72 | 0.552557 |
Target: 5'- gACCG-CCUgGCCCuCGUGCGGCU-CCGa -3' miRNA: 3'- -UGGUaGGAgUGGG-GCGCGCUGAuGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 94548 | 0.72 | 0.543019 |
Target: 5'- gGCCAgcagCACCCCgGCGCGGCUgacGCCGa -3' miRNA: 3'- -UGGUaggaGUGGGG-CGCGCUGA---UGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 100032 | 0.72 | 0.542068 |
Target: 5'- cGCCGUCCUcCGCCuCCGCcuccgccuccaucGCGACggggGCCGc -3' miRNA: 3'- -UGGUAGGA-GUGG-GGCG-------------CGCUGa---UGGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 208659 | 0.73 | 0.524111 |
Target: 5'- cCCGUCUcCGCCCCGgGCGGCgucCCGg -3' miRNA: 3'- uGGUAGGaGUGGGGCgCGCUGau-GGU- -5' |
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8956 | 3' | -58.9 | NC_002512.2 | + | 70901 | 0.73 | 0.50546 |
Target: 5'- cGCCG-CCUcCGCCCCGcCGUGGCcGCCGa -3' miRNA: 3'- -UGGUaGGA-GUGGGGC-GCGCUGaUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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