miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 5' -59.5 NC_002512.2 + 8448 0.66 0.843318
Target:  5'- --cCGCGCCCcggccGCgguccgCAUGGCGGccGUCGGa -3'
miRNA:   3'- cgaGCGUGGG-----CGa-----GUACCGCC--CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 9479 0.66 0.865542
Target:  5'- gGCgggCGgGCCCGCgagcGGCGGGUa-- -3'
miRNA:   3'- -CGa--GCgUGGGCGaguaCCGCCCAguc -5'
8956 5' -59.5 NC_002512.2 + 9760 0.66 0.865542
Target:  5'- aGC-CGgACCCGCcgccccgCGUGGCGGcUCAc -3'
miRNA:   3'- -CGaGCgUGGGCGa------GUACCGCCcAGUc -5'
8956 5' -59.5 NC_002512.2 + 20868 0.74 0.414412
Target:  5'- gGC-CGC-CCCGCUCAUGGCGGcGacgaCGGg -3'
miRNA:   3'- -CGaGCGuGGGCGAGUACCGCC-Ca---GUC- -5'
8956 5' -59.5 NC_002512.2 + 21538 0.66 0.843318
Target:  5'- --aCGCACCUGCUCcucGG-GGGUgAGg -3'
miRNA:   3'- cgaGCGUGGGCGAGua-CCgCCCAgUC- -5'
8956 5' -59.5 NC_002512.2 + 22790 0.72 0.52044
Target:  5'- aGCUgCGCGCCCGCUaccacaagGGCGGGaUCc- -3'
miRNA:   3'- -CGA-GCGUGGGCGAgua-----CCGCCC-AGuc -5'
8956 5' -59.5 NC_002512.2 + 45279 0.77 0.270511
Target:  5'- cGCUCGCGCUCGuCUC---GCGGGUCGGa -3'
miRNA:   3'- -CGAGCGUGGGC-GAGuacCGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 52835 0.69 0.712587
Target:  5'- gGCUCuccacgaacaaGCACCUacgGCUCAacUGGCGGGacgcgCAGg -3'
miRNA:   3'- -CGAG-----------CGUGGG---CGAGU--ACCGCCCa----GUC- -5'
8956 5' -59.5 NC_002512.2 + 54243 0.67 0.827627
Target:  5'- aCUCGCACguCCGCagcggCAgggcGGCGGcGUCGGc -3'
miRNA:   3'- cGAGCGUG--GGCGa----GUa---CCGCC-CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 59684 0.68 0.776927
Target:  5'- cGCgaggaGCACCCGCUCAUGGCc------ -3'
miRNA:   3'- -CGag---CGUGGGCGAGUACCGcccaguc -5'
8956 5' -59.5 NC_002512.2 + 74005 0.66 0.850156
Target:  5'- --cCGCGCCCGCcgUCggggacgaacagcGUGGCcGGGUaCAGg -3'
miRNA:   3'- cgaGCGUGGGCG--AG-------------UACCG-CCCA-GUC- -5'
8956 5' -59.5 NC_002512.2 + 74388 0.67 0.827627
Target:  5'- -gUCGCAgCaGCUCAUGG-GGGUcCGGa -3'
miRNA:   3'- cgAGCGUgGgCGAGUACCgCCCA-GUC- -5'
8956 5' -59.5 NC_002512.2 + 77741 0.72 0.547711
Target:  5'- cGCUCGCaaucggacACCCGCUCGcgaaGGaucccccagacucCGGGUCGGg -3'
miRNA:   3'- -CGAGCG--------UGGGCGAGUa---CC-------------GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 79475 0.68 0.740691
Target:  5'- gGCgaccgCGCGCCCGUg---GGCGGuUCGGg -3'
miRNA:   3'- -CGa----GCGUGGGCGaguaCCGCCcAGUC- -5'
8956 5' -59.5 NC_002512.2 + 82447 0.69 0.712587
Target:  5'- gGCgUCGguCCCGCUCccgaaGGCGGGgaaGGg -3'
miRNA:   3'- -CG-AGCguGGGCGAGua---CCGCCCag-UC- -5'
8956 5' -59.5 NC_002512.2 + 89576 0.67 0.794375
Target:  5'- aGCUCGcCugCgGCggGUGGCGGGaugucgCGGg -3'
miRNA:   3'- -CGAGC-GugGgCGagUACCGCCCa-----GUC- -5'
8956 5' -59.5 NC_002512.2 + 94336 0.68 0.749898
Target:  5'- cGCUCGacccagaaGCCCaGCUCGUGGCGccuGG-CGGc -3'
miRNA:   3'- -CGAGCg-------UGGG-CGAGUACCGC---CCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 105408 0.66 0.835556
Target:  5'- cCUCGUAgCCGUugUCGUGGCGccGGcUCAGc -3'
miRNA:   3'- cGAGCGUgGGCG--AGUACCGC--CC-AGUC- -5'
8956 5' -59.5 NC_002512.2 + 106770 0.67 0.811295
Target:  5'- gGCUCucgGCCCGCggCAcUGGUcgGGGUCGGg -3'
miRNA:   3'- -CGAGcg-UGGGCGa-GU-ACCG--CCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 108988 0.68 0.767128
Target:  5'- gGCcgUGUACCUGCUCGUcggcgccGGCGGcGUCGu -3'
miRNA:   3'- -CGa-GCGUGGGCGAGUA-------CCGCC-CAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.