miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 5' -59.5 NC_002512.2 + 213147 1.09 0.002076
Target:  5'- cGCUCGCACCCGCUCAUGGCGGGUCAGc -3'
miRNA:   3'- -CGAGCGUGGGCGAGUACCGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 45279 0.77 0.270511
Target:  5'- cGCUCGCGCUCGuCUC---GCGGGUCGGa -3'
miRNA:   3'- -CGAGCGUGGGC-GAGuacCGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 20868 0.74 0.414412
Target:  5'- gGC-CGC-CCCGCUCAUGGCGGcGacgaCGGg -3'
miRNA:   3'- -CGaGCGuGGGCGAGUACCGCC-Ca---GUC- -5'
8956 5' -59.5 NC_002512.2 + 122037 0.74 0.43118
Target:  5'- cGCUCGCGCaCGCcCggGGCGGcGUCGGc -3'
miRNA:   3'- -CGAGCGUGgGCGaGuaCCGCC-CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 219478 0.72 0.511158
Target:  5'- cGgUCGUGCCC-CUgG-GGCGGGUCAGa -3'
miRNA:   3'- -CgAGCGUGGGcGAgUaCCGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 22790 0.72 0.52044
Target:  5'- aGCUgCGCGCCCGCUaccacaagGGCGGGaUCc- -3'
miRNA:   3'- -CGA-GCGUGGGCGAgua-----CCGCCC-AGuc -5'
8956 5' -59.5 NC_002512.2 + 204679 0.72 0.538252
Target:  5'- gGCUCGCuCCCGCUCcgucgcGGCGGacgcgacGUCGGc -3'
miRNA:   3'- -CGAGCGuGGGCGAGua----CCGCC-------CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 77741 0.72 0.547711
Target:  5'- cGCUCGCaaucggacACCCGCUCGcgaaGGaucccccagacucCGGGUCGGg -3'
miRNA:   3'- -CGAGCG--------UGGGCGAGUa---CC-------------GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 219995 0.71 0.606336
Target:  5'- cCUCGCuCCCcCUCGcccGGCGGGUCGa -3'
miRNA:   3'- cGAGCGuGGGcGAGUa--CCGCCCAGUc -5'
8956 5' -59.5 NC_002512.2 + 169947 0.69 0.683928
Target:  5'- cGUUCGUGCCCGCccaCAUGuagaacaGGGUCGGg -3'
miRNA:   3'- -CGAGCGUGGGCGa--GUACcg-----CCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 82447 0.69 0.712587
Target:  5'- gGCgUCGguCCCGCUCccgaaGGCGGGgaaGGg -3'
miRNA:   3'- -CG-AGCguGGGCGAGua---CCGCCCag-UC- -5'
8956 5' -59.5 NC_002512.2 + 52835 0.69 0.712587
Target:  5'- gGCUCuccacgaacaaGCACCUacgGCUCAacUGGCGGGacgcgCAGg -3'
miRNA:   3'- -CGAG-----------CGUGGG---CGAGU--ACCGCCCa----GUC- -5'
8956 5' -59.5 NC_002512.2 + 168999 0.68 0.731398
Target:  5'- aGCggucgCGCGCCgGCUCGgcgauccgGGCGGG-CGu -3'
miRNA:   3'- -CGa----GCGUGGgCGAGUa-------CCGCCCaGUc -5'
8956 5' -59.5 NC_002512.2 + 79475 0.68 0.740691
Target:  5'- gGCgaccgCGCGCCCGUg---GGCGGuUCGGg -3'
miRNA:   3'- -CGa----GCGUGGGCGaguaCCGCCcAGUC- -5'
8956 5' -59.5 NC_002512.2 + 94336 0.68 0.749898
Target:  5'- cGCUCGacccagaaGCCCaGCUCGUGGCGccuGG-CGGc -3'
miRNA:   3'- -CGAGCg-------UGGG-CGAGUACCGC---CCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 195545 0.68 0.759012
Target:  5'- cCUC-CGCCCGCUCAgcuccCGGGUCGc -3'
miRNA:   3'- cGAGcGUGGGCGAGUacc--GCCCAGUc -5'
8956 5' -59.5 NC_002512.2 + 108988 0.68 0.767128
Target:  5'- gGCcgUGUACCUGCUCGUcggcgccGGCGGcGUCGu -3'
miRNA:   3'- -CGa-GCGUGGGCGAGUA-------CCGCC-CAGUc -5'
8956 5' -59.5 NC_002512.2 + 193440 0.68 0.768024
Target:  5'- cGCgacCGCGgCCGCcgGUGGCGGGagCGGg -3'
miRNA:   3'- -CGa--GCGUgGGCGagUACCGCCCa-GUC- -5'
8956 5' -59.5 NC_002512.2 + 181676 0.68 0.768024
Target:  5'- -gUCGCGcCCCGCggCcgGgaucccGCGGGUCAGu -3'
miRNA:   3'- cgAGCGU-GGGCGa-GuaC------CGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 59684 0.68 0.776927
Target:  5'- cGCgaggaGCACCCGCUCAUGGCc------ -3'
miRNA:   3'- -CGag---CGUGGGCGAGUACCGcccaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.