miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 5' -59.5 NC_002512.2 + 89576 0.67 0.794375
Target:  5'- aGCUCGcCugCgGCggGUGGCGGGaugucgCGGg -3'
miRNA:   3'- -CGAGC-GugGgCGagUACCGCCCa-----GUC- -5'
8956 5' -59.5 NC_002512.2 + 116379 0.67 0.802905
Target:  5'- uGCUgGC-CCUGCggucccCggGGCGGGUCGc -3'
miRNA:   3'- -CGAgCGuGGGCGa-----GuaCCGCCCAGUc -5'
8956 5' -59.5 NC_002512.2 + 138315 0.67 0.802905
Target:  5'- cGCUCGUagcggAUCCGCgagagcGGCGuGGUCAGc -3'
miRNA:   3'- -CGAGCG-----UGGGCGagua--CCGC-CCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 106770 0.67 0.811295
Target:  5'- gGCUCucgGCCCGCggCAcUGGUcgGGGUCGGg -3'
miRNA:   3'- -CGAGcg-UGGGCGa-GU-ACCG--CCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 227072 0.67 0.820354
Target:  5'- gGCcCGCGCCCGCgccgggucccgccggCcgccGGcCGGGUCGGg -3'
miRNA:   3'- -CGaGCGUGGGCGa--------------Gua--CC-GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 132525 0.67 0.827627
Target:  5'- cGC-CGCGgucCCCGCUCcgcgGGCGGcgccGUCGGc -3'
miRNA:   3'- -CGaGCGU---GGGCGAGua--CCGCC----CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 74388 0.67 0.827627
Target:  5'- -gUCGCAgCaGCUCAUGG-GGGUcCGGa -3'
miRNA:   3'- cgAGCGUgGgCGAGUACCgCCCA-GUC- -5'
8956 5' -59.5 NC_002512.2 + 54243 0.67 0.827627
Target:  5'- aCUCGCACguCCGCagcggCAgggcGGCGGcGUCGGc -3'
miRNA:   3'- cGAGCGUG--GGCGa----GUa---CCGCC-CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 195049 0.67 0.827627
Target:  5'- cGC-CGCgGCCCGCg---GGCGGGagGGu -3'
miRNA:   3'- -CGaGCG-UGGGCGaguaCCGCCCagUC- -5'
8956 5' -59.5 NC_002512.2 + 110687 0.66 0.835556
Target:  5'- uGCUCGCGCagCCGCcgCAgGGCcaGGGcCAGc -3'
miRNA:   3'- -CGAGCGUG--GGCGa-GUaCCG--CCCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 222235 0.66 0.835556
Target:  5'- gGC-CGCGuCCuucguCGC-CGUGGCGGGUCu- -3'
miRNA:   3'- -CGaGCGU-GG-----GCGaGUACCGCCCAGuc -5'
8956 5' -59.5 NC_002512.2 + 105408 0.66 0.835556
Target:  5'- cCUCGUAgCCGUugUCGUGGCGccGGcUCAGc -3'
miRNA:   3'- cGAGCGUgGGCG--AGUACCGC--CC-AGUC- -5'
8956 5' -59.5 NC_002512.2 + 21538 0.66 0.843318
Target:  5'- --aCGCACCUGCUCcucGG-GGGUgAGg -3'
miRNA:   3'- cgaGCGUGGGCGAGua-CCgCCCAgUC- -5'
8956 5' -59.5 NC_002512.2 + 8448 0.66 0.843318
Target:  5'- --cCGCGCCCcggccGCgguccgCAUGGCGGccGUCGGa -3'
miRNA:   3'- cgaGCGUGGG-----CGa-----GUACCGCC--CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 116957 0.66 0.843318
Target:  5'- gGCUCGCGCgccaccgggCCGCcgacgccccgUCcgGGCGGGcCGa -3'
miRNA:   3'- -CGAGCGUG---------GGCG----------AGuaCCGCCCaGUc -5'
8956 5' -59.5 NC_002512.2 + 74005 0.66 0.850156
Target:  5'- --cCGCGCCCGCcgUCggggacgaacagcGUGGCcGGGUaCAGg -3'
miRNA:   3'- cgaGCGUGGGCG--AG-------------UACCG-CCCA-GUC- -5'
8956 5' -59.5 NC_002512.2 + 9479 0.66 0.865542
Target:  5'- gGCgggCGgGCCCGCgagcGGCGGGUa-- -3'
miRNA:   3'- -CGa--GCgUGGGCGaguaCCGCCCAguc -5'
8956 5' -59.5 NC_002512.2 + 198138 0.66 0.865542
Target:  5'- gGCgaagCGCGagcCCCGCgcg-GGcCGGGUCGGc -3'
miRNA:   3'- -CGa---GCGU---GGGCGaguaCC-GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 205109 0.66 0.865542
Target:  5'- --gCGCGCCCGgaCccGaGCGGGUCu- -3'
miRNA:   3'- cgaGCGUGGGCgaGuaC-CGCCCAGuc -5'
8956 5' -59.5 NC_002512.2 + 116449 0.66 0.865542
Target:  5'- -aUCGcCACCCaGCUCggGGaCGGGgCGGu -3'
miRNA:   3'- cgAGC-GUGGG-CGAGuaCC-GCCCaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.