miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8956 5' -59.5 NC_002512.2 + 59684 0.68 0.776927
Target:  5'- cGCgaggaGCACCCGCUCAUGGCc------ -3'
miRNA:   3'- -CGag---CGUGGGCGAGUACCGcccaguc -5'
8956 5' -59.5 NC_002512.2 + 89576 0.67 0.794375
Target:  5'- aGCUCGcCugCgGCggGUGGCGGGaugucgCGGg -3'
miRNA:   3'- -CGAGC-GugGgCGagUACCGCCCa-----GUC- -5'
8956 5' -59.5 NC_002512.2 + 193440 0.68 0.768024
Target:  5'- cGCgacCGCGgCCGCcgGUGGCGGGagCGGg -3'
miRNA:   3'- -CGa--GCGUgGGCGagUACCGCCCa-GUC- -5'
8956 5' -59.5 NC_002512.2 + 181676 0.68 0.768024
Target:  5'- -gUCGCGcCCCGCggCcgGgaucccGCGGGUCAGu -3'
miRNA:   3'- cgAGCGU-GGGCGa-GuaC------CGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 195545 0.68 0.759012
Target:  5'- cCUC-CGCCCGCUCAgcuccCGGGUCGc -3'
miRNA:   3'- cGAGcGUGGGCGAGUacc--GCCCAGUc -5'
8956 5' -59.5 NC_002512.2 + 94336 0.68 0.749898
Target:  5'- cGCUCGacccagaaGCCCaGCUCGUGGCGccuGG-CGGc -3'
miRNA:   3'- -CGAGCg-------UGGG-CGAGUACCGC---CCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 168999 0.68 0.731398
Target:  5'- aGCggucgCGCGCCgGCUCGgcgauccgGGCGGG-CGu -3'
miRNA:   3'- -CGa----GCGUGGgCGAGUa-------CCGCCCaGUc -5'
8956 5' -59.5 NC_002512.2 + 169947 0.69 0.683928
Target:  5'- cGUUCGUGCCCGCccaCAUGuagaacaGGGUCGGg -3'
miRNA:   3'- -CGAGCGUGGGCGa--GUACcg-----CCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 219995 0.71 0.606336
Target:  5'- cCUCGCuCCCcCUCGcccGGCGGGUCGa -3'
miRNA:   3'- cGAGCGuGGGcGAGUa--CCGCCCAGUc -5'
8956 5' -59.5 NC_002512.2 + 77741 0.72 0.547711
Target:  5'- cGCUCGCaaucggacACCCGCUCGcgaaGGaucccccagacucCGGGUCGGg -3'
miRNA:   3'- -CGAGCG--------UGGGCGAGUa---CC-------------GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 227072 0.67 0.820354
Target:  5'- gGCcCGCGCCCGCgccgggucccgccggCcgccGGcCGGGUCGGg -3'
miRNA:   3'- -CGaGCGUGGGCGa--------------Gua--CC-GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 132525 0.67 0.827627
Target:  5'- cGC-CGCGgucCCCGCUCcgcgGGCGGcgccGUCGGc -3'
miRNA:   3'- -CGaGCGU---GGGCGAGua--CCGCC----CAGUC- -5'
8956 5' -59.5 NC_002512.2 + 213147 1.09 0.002076
Target:  5'- cGCUCGCACCCGCUCAUGGCGGGUCAGc -3'
miRNA:   3'- -CGAGCGUGGGCGAGUACCGCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 222526 0.66 0.865542
Target:  5'- cGC-CGCGgCCGCcgUCGcGGUGGGcCGGg -3'
miRNA:   3'- -CGaGCGUgGGCG--AGUaCCGCCCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 116449 0.66 0.865542
Target:  5'- -aUCGcCACCCaGCUCggGGaCGGGgCGGu -3'
miRNA:   3'- cgAGC-GUGGG-CGAGuaCC-GCCCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 205109 0.66 0.865542
Target:  5'- --gCGCGCCCGgaCccGaGCGGGUCu- -3'
miRNA:   3'- cgaGCGUGGGCgaGuaC-CGCCCAGuc -5'
8956 5' -59.5 NC_002512.2 + 198138 0.66 0.865542
Target:  5'- gGCgaagCGCGagcCCCGCgcg-GGcCGGGUCGGc -3'
miRNA:   3'- -CGa---GCGU---GGGCGaguaCC-GCCCAGUC- -5'
8956 5' -59.5 NC_002512.2 + 222235 0.66 0.835556
Target:  5'- gGC-CGCGuCCuucguCGC-CGUGGCGGGUCu- -3'
miRNA:   3'- -CGaGCGU-GG-----GCGaGUACCGCCCAGuc -5'
8956 5' -59.5 NC_002512.2 + 110687 0.66 0.835556
Target:  5'- uGCUCGCGCagCCGCcgCAgGGCcaGGGcCAGc -3'
miRNA:   3'- -CGAGCGUG--GGCGa-GUaCCG--CCCaGUC- -5'
8956 5' -59.5 NC_002512.2 + 195049 0.67 0.827627
Target:  5'- cGC-CGCgGCCCGCg---GGCGGGagGGu -3'
miRNA:   3'- -CGaGCG-UGGGCGaguaCCGCCCagUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.