miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 94723 0.72 0.706632
Target:  5'- cGGGGCG-CAggcGUUCGCUGGCCAg--- -3'
miRNA:   3'- -CCCUGCuGUa--CAAGCGGCCGGUgcac -5'
8957 5' -56.4 NC_002512.2 + 97146 0.66 0.952116
Target:  5'- cGGGACGACGccg-CGCUGcGCCuGCGg- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGC-CGG-UGCac -5'
8957 5' -56.4 NC_002512.2 + 97487 0.69 0.876489
Target:  5'- cGGGGC-ACAuggUGUUCG-CGGCCAUGg- -3'
miRNA:   3'- -CCCUGcUGU---ACAAGCgGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 100337 0.77 0.467
Target:  5'- cGGGACuGGCGgg--CGCCGGCCACGc- -3'
miRNA:   3'- -CCCUG-CUGUacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 103577 0.68 0.914109
Target:  5'- gGGaGACGACGcc-UCGCaGGCCACGa- -3'
miRNA:   3'- -CC-CUGCUGUacaAGCGgCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 104564 0.69 0.868784
Target:  5'- cGGACGGCGaagagcacggcgcUGUUCGCCaGCUgcuucaacacgaACGUGa -3'
miRNA:   3'- cCCUGCUGU-------------ACAAGCGGcCGG------------UGCAC- -5'
8957 5' -56.4 NC_002512.2 + 104700 0.69 0.876489
Target:  5'- uGGACGGCcaccUGgaagggGCCGGCCACGa- -3'
miRNA:   3'- cCCUGCUGu---ACaag---CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 104947 0.66 0.955895
Target:  5'- cGGcGuCGGCGcgg-CGCCGGCCuCGUGu -3'
miRNA:   3'- -CC-CuGCUGUacaaGCGGCCGGuGCAC- -5'
8957 5' -56.4 NC_002512.2 + 105690 0.67 0.939501
Target:  5'- cGGugGugAUGUgcgUGCCGaacGCCGCGc- -3'
miRNA:   3'- cCCugCugUACAa--GCGGC---CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 110394 0.66 0.955895
Target:  5'- uGGcCGuguACAUGUgcUCGCCGGaCCGCGc- -3'
miRNA:   3'- cCCuGC---UGUACA--AGCGGCC-GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 110499 0.66 0.959466
Target:  5'- -cGGCGuCAUGUUCGgguugCGGCCGCGc- -3'
miRNA:   3'- ccCUGCuGUACAAGCg----GCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 112037 0.76 0.485077
Target:  5'- cGGGACGu--UGUUgGCCaGCCGCGUGc -3'
miRNA:   3'- -CCCUGCuguACAAgCGGcCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 113463 0.66 0.948126
Target:  5'- aGGugGAcCAUGUcguagcuguUCGCgaaGGCCAgGUGu -3'
miRNA:   3'- cCCugCU-GUACA---------AGCGg--CCGGUgCAC- -5'
8957 5' -56.4 NC_002512.2 + 116709 0.72 0.697002
Target:  5'- cGGACGGCGa---CGCCGGUCGCGUc -3'
miRNA:   3'- cCCUGCUGUacaaGCGGCCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 117136 0.68 0.896251
Target:  5'- cGGGACGGCcgGcucucCGCCuuCCGCGUGc -3'
miRNA:   3'- -CCCUGCUGuaCaa---GCGGccGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 118080 0.74 0.609002
Target:  5'- gGGGGCGGCuccggCGCCGGCgGCGa- -3'
miRNA:   3'- -CCCUGCUGuacaaGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 119025 0.69 0.847356
Target:  5'- uGGugGACGg----GCCGGCCGuCGUGg -3'
miRNA:   3'- cCCugCUGUacaagCGGCCGGU-GCAC- -5'
8957 5' -56.4 NC_002512.2 + 119346 0.68 0.883283
Target:  5'- gGGGGCGGaaa---CGCCGGUCACGg- -3'
miRNA:   3'- -CCCUGCUguacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 119379 0.67 0.934862
Target:  5'- uGGACGACGcGgcgGCCcugcugcagGGCCGCGUGc -3'
miRNA:   3'- cCCUGCUGUaCaagCGG---------CCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 121142 0.7 0.798405
Target:  5'- -cGACGGCGgccgagaCGCCGGCCGCGg- -3'
miRNA:   3'- ccCUGCUGUacaa---GCGGCCGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.