miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 57860 0.66 0.948126
Target:  5'- uGGGGCG-CAUGc-UGCCGGCCGg--- -3'
miRNA:   3'- -CCCUGCuGUACaaGCGGCCGGUgcac -5'
8957 5' -56.4 NC_002512.2 + 58022 0.67 0.939047
Target:  5'- aGGACGGCGUuc-CGCCcccucccGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGUAcaaGCGG-------CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 64886 0.74 0.628624
Target:  5'- gGGGACGGCcucucCGUCGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGuacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 66442 0.74 0.609002
Target:  5'- -cGACGACAcGUcucuccucCGCCGGCUACGUGa -3'
miRNA:   3'- ccCUGCUGUaCAa-------GCGGCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 68174 0.74 0.609002
Target:  5'- -aGACGAUcccgUCGCCGGCCGCGUc -3'
miRNA:   3'- ccCUGCUGuacaAGCGGCCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 68903 0.68 0.902419
Target:  5'- cGGGGCGGuCGUGc-UGCUGGCCGCc-- -3'
miRNA:   3'- -CCCUGCU-GUACaaGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 72797 0.7 0.798405
Target:  5'- cGGGACGGgcccgcCGUGggCGCCGGCgACc-- -3'
miRNA:   3'- -CCCUGCU------GUACaaGCGGCCGgUGcac -5'
8957 5' -56.4 NC_002512.2 + 72836 0.66 0.962833
Target:  5'- cGGGACGcccgccuuGCcgGguccUCGCUccgGGCCGCGUc -3'
miRNA:   3'- -CCCUGC--------UGuaCa---AGCGG---CCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 77198 0.66 0.947715
Target:  5'- gGGGACgcgacgaGACcgGgcCGCCGGCCccaguACGUu -3'
miRNA:   3'- -CCCUG-------CUGuaCaaGCGGCCGG-----UGCAc -5'
8957 5' -56.4 NC_002512.2 + 79608 0.68 0.889871
Target:  5'- cGGGCGGCAg---CGCCGGgUCGCGg- -3'
miRNA:   3'- cCCUGCUGUacaaGCGGCC-GGUGCac -5'
8957 5' -56.4 NC_002512.2 + 82127 0.72 0.735143
Target:  5'- cGGGACGGCcg---CGCUGGCgCACGUc -3'
miRNA:   3'- -CCCUGCUGuacaaGCGGCCG-GUGCAc -5'
8957 5' -56.4 NC_002512.2 + 82384 0.72 0.706632
Target:  5'- cGGGACGGgAgaagCGCCGGUCGCGc- -3'
miRNA:   3'- -CCCUGCUgUacaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 87846 0.67 0.939047
Target:  5'- cGGGcccucGCGGCGgg-UCGCCGGCCcccggccGCGg- -3'
miRNA:   3'- -CCC-----UGCUGUacaAGCGGCCGG-------UGCac -5'
8957 5' -56.4 NC_002512.2 + 89688 0.67 0.939501
Target:  5'- cGGGGCGAgAUGUacggucgugUCGCCGaaCGgGUGg -3'
miRNA:   3'- -CCCUGCUgUACA---------AGCGGCcgGUgCAC- -5'
8957 5' -56.4 NC_002512.2 + 90904 0.72 0.697002
Target:  5'- cGGGACGGCcgGacUGgCGGCCGCGa- -3'
miRNA:   3'- -CCCUGCUGuaCaaGCgGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 92557 0.68 0.883283
Target:  5'- cGGcGACGACGUcGgaggCGCCGacGCCGCGg- -3'
miRNA:   3'- -CC-CUGCUGUA-Caa--GCGGC--CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 92594 0.7 0.815352
Target:  5'- aGGGGCGGCGg--UCccgagGCCGGUCGCGa- -3'
miRNA:   3'- -CCCUGCUGUacaAG-----CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 92667 0.7 0.815352
Target:  5'- cGGGACGGCcgcccgCGCCGGgCGCGc- -3'
miRNA:   3'- -CCCUGCUGuacaa-GCGGCCgGUGCac -5'
8957 5' -56.4 NC_002512.2 + 94405 0.68 0.902419
Target:  5'- aGGACGGCGgucuUGgcgcuccaGUCGGCCGCGUc -3'
miRNA:   3'- cCCUGCUGU----ACaag-----CGGCCGGUGCAc -5'
8957 5' -56.4 NC_002512.2 + 94494 0.68 0.883283
Target:  5'- gGGGACG-CAg--UCGUCGGgCGCGUc -3'
miRNA:   3'- -CCCUGCuGUacaAGCGGCCgGUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.