miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 72797 0.7 0.798405
Target:  5'- cGGGACGGgcccgcCGUGggCGCCGGCgACc-- -3'
miRNA:   3'- -CCCUGCU------GUACaaGCGGCCGgUGcac -5'
8957 5' -56.4 NC_002512.2 + 121142 0.7 0.798405
Target:  5'- -cGACGGCGgccgagaCGCCGGCCGCGg- -3'
miRNA:   3'- ccCUGCUGUacaa---GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 212416 0.7 0.80355
Target:  5'- aGGACGACGggcgggaggucgaGUUCgggccgGCCGGCCGCGa- -3'
miRNA:   3'- cCCUGCUGUa------------CAAG------CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 92667 0.7 0.815352
Target:  5'- cGGGACGGCcgcccgCGCCGGgCGCGc- -3'
miRNA:   3'- -CCCUGCUGuacaa-GCGGCCgGUGCac -5'
8957 5' -56.4 NC_002512.2 + 92594 0.7 0.815352
Target:  5'- aGGGGCGGCGg--UCccgagGCCGGUCGCGa- -3'
miRNA:   3'- -CCCUGCUGUacaAG-----CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 189122 0.7 0.815352
Target:  5'- cGGacgcGCGAUAgggGUUCGCCGGCCgauaucGCGUc -3'
miRNA:   3'- cCC----UGCUGUa--CAAGCGGCCGG------UGCAc -5'
8957 5' -56.4 NC_002512.2 + 211770 0.7 0.8236
Target:  5'- cGGGAgGACGUGgagGCCcggguGGCCGCGg- -3'
miRNA:   3'- -CCCUgCUGUACaagCGG-----CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 182213 0.7 0.8236
Target:  5'- cGGGugGaACAgcacGUUCGgCGGCgcCACGUGc -3'
miRNA:   3'- -CCCugC-UGUa---CAAGCgGCCG--GUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 169556 0.7 0.831688
Target:  5'- -cGGCGGCGUGgccuUCGCCGGCgucucCGCGUc -3'
miRNA:   3'- ccCUGCUGUACa---AGCGGCCG-----GUGCAc -5'
8957 5' -56.4 NC_002512.2 + 9749 0.7 0.839609
Target:  5'- gGGGGCGGCGga---GCCGGacccgccgccCCGCGUGg -3'
miRNA:   3'- -CCCUGCUGUacaagCGGCC----------GGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 127659 0.7 0.839609
Target:  5'- cGGACGGCcgG-UCGagggccgcuCCGGCCGCGg- -3'
miRNA:   3'- cCCUGCUGuaCaAGC---------GGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 155381 0.69 0.847356
Target:  5'- cGGGGCGGCGg---CGCCGGCgGgCGa- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCGgU-GCac -5'
8957 5' -56.4 NC_002512.2 + 8985 0.69 0.847356
Target:  5'- uGGACGAacuCGUagaggUCGUCGGCCACGaUGg -3'
miRNA:   3'- cCCUGCU---GUAca---AGCGGCCGGUGC-AC- -5'
8957 5' -56.4 NC_002512.2 + 119025 0.69 0.847356
Target:  5'- uGGugGACGg----GCCGGCCGuCGUGg -3'
miRNA:   3'- cCCugCUGUacaagCGGCCGGU-GCAC- -5'
8957 5' -56.4 NC_002512.2 + 207785 0.69 0.854923
Target:  5'- cGGGACGGCGUcGUcUC-CCGGCCggACGa- -3'
miRNA:   3'- -CCCUGCUGUA-CA-AGcGGCCGG--UGCac -5'
8957 5' -56.4 NC_002512.2 + 157385 0.69 0.854923
Target:  5'- aGGGACcgGACGaGaUCGCCGGCUGCa-- -3'
miRNA:   3'- -CCCUG--CUGUaCaAGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 221453 0.69 0.854923
Target:  5'- cGGGGCG-CGgucGUcCGaCCGGCCGCGg- -3'
miRNA:   3'- -CCCUGCuGUa--CAaGC-GGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 223281 0.69 0.862304
Target:  5'- cGGGACGccgcgcgcagcuACAUGgugcCGCCGGUCGacacCGUGa -3'
miRNA:   3'- -CCCUGC------------UGUACaa--GCGGCCGGU----GCAC- -5'
8957 5' -56.4 NC_002512.2 + 151869 0.69 0.862304
Target:  5'- cGGAUGACucGUGggCGCCGGCgaucCGCGg- -3'
miRNA:   3'- cCCUGCUG--UACaaGCGGCCG----GUGCac -5'
8957 5' -56.4 NC_002512.2 + 104564 0.69 0.868784
Target:  5'- cGGACGGCGaagagcacggcgcUGUUCGCCaGCUgcuucaacacgaACGUGa -3'
miRNA:   3'- cCCUGCUGU-------------ACAAGCGGcCGG------------UGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.