Results 1 - 20 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8957 | 5' | -56.4 | NC_002512.2 | + | 212235 | 1.11 | 0.003638 |
Target: 5'- gGGGACGACAUGUUCGCCGGCCACGUGg -3' miRNA: 3'- -CCCUGCUGUACAAGCGGCCGGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 100337 | 0.77 | 0.467 |
Target: 5'- cGGGACuGGCGgg--CGCCGGCCACGc- -3' miRNA: 3'- -CCCUG-CUGUacaaGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 112037 | 0.76 | 0.485077 |
Target: 5'- cGGGACGu--UGUUgGCCaGCCGCGUGc -3' miRNA: 3'- -CCCUGCuguACAAgCGGcCGGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 189600 | 0.75 | 0.579701 |
Target: 5'- cGGGACGACGUucGUgcgCGgCGGCCGCa-- -3' miRNA: 3'- -CCCUGCUGUA--CAa--GCgGCCGGUGcac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 45415 | 0.74 | 0.59921 |
Target: 5'- cGGGcgcuCGACGgcggCGCCGGCCGCGg- -3' miRNA: 3'- -CCCu---GCUGUacaaGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 68174 | 0.74 | 0.609002 |
Target: 5'- -aGACGAUcccgUCGCCGGCCGCGUc -3' miRNA: 3'- ccCUGCUGuacaAGCGGCCGGUGCAc -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 66442 | 0.74 | 0.609002 |
Target: 5'- -cGACGACAcGUcucuccucCGCCGGCUACGUGa -3' miRNA: 3'- ccCUGCUGUaCAa-------GCGGCCGGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 118080 | 0.74 | 0.609002 |
Target: 5'- gGGGGCGGCuccggCGCCGGCgGCGa- -3' miRNA: 3'- -CCCUGCUGuacaaGCGGCCGgUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 64886 | 0.74 | 0.628624 |
Target: 5'- gGGGACGGCcucucCGUCGGCCGCGa- -3' miRNA: 3'- -CCCUGCUGuacaaGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 146712 | 0.73 | 0.65806 |
Target: 5'- cGGaGACGACGgcgGggCGgCGGCCGCGg- -3' miRNA: 3'- -CC-CUGCUGUa--CaaGCgGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 90904 | 0.72 | 0.697002 |
Target: 5'- cGGGACGGCcgGacUGgCGGCCGCGa- -3' miRNA: 3'- -CCCUGCUGuaCaaGCgGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 116709 | 0.72 | 0.697002 |
Target: 5'- cGGACGGCGa---CGCCGGUCGCGUc -3' miRNA: 3'- cCCUGCUGUacaaGCGGCCGGUGCAc -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 158966 | 0.72 | 0.697002 |
Target: 5'- -cGGCGGCGagcgGUUCGgCGGCCACGg- -3' miRNA: 3'- ccCUGCUGUa---CAAGCgGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 133800 | 0.72 | 0.706632 |
Target: 5'- gGGGACGACGgucgCGCCGGgUGCGg- -3' miRNA: 3'- -CCCUGCUGUacaaGCGGCCgGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 82384 | 0.72 | 0.706632 |
Target: 5'- cGGGACGGgAgaagCGCCGGUCGCGc- -3' miRNA: 3'- -CCCUGCUgUacaaGCGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 94723 | 0.72 | 0.706632 |
Target: 5'- cGGGGCG-CAggcGUUCGCUGGCCAg--- -3' miRNA: 3'- -CCCUGCuGUa--CAAGCGGCCGGUgcac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 12086 | 0.72 | 0.724763 |
Target: 5'- cGGGACGGCGacgccgauccgccaGCCGGCCGCGa- -3' miRNA: 3'- -CCCUGCUGUacaag---------CGGCCGGUGCac -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 8858 | 0.72 | 0.735143 |
Target: 5'- cGGGCGGCAccccgUUGgUGGCCGCGUGg -3' miRNA: 3'- cCCUGCUGUaca--AGCgGCCGGUGCAC- -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 82127 | 0.72 | 0.735143 |
Target: 5'- cGGGACGGCcg---CGCUGGCgCACGUc -3' miRNA: 3'- -CCCUGCUGuacaaGCGGCCG-GUGCAc -5' |
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8957 | 5' | -56.4 | NC_002512.2 | + | 217353 | 0.71 | 0.762911 |
Target: 5'- cGGGACGcACGaGUUCaGCauggCGGCCugGUGc -3' miRNA: 3'- -CCCUGC-UGUaCAAG-CG----GCCGGugCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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