miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 190049 0.68 0.914109
Target:  5'- -cGACGAgguCAUGUUCauccacgaGCUGGCCGCGg- -3'
miRNA:   3'- ccCUGCU---GUACAAG--------CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 189600 0.75 0.579701
Target:  5'- cGGGACGACGUucGUgcgCGgCGGCCGCa-- -3'
miRNA:   3'- -CCCUGCUGUA--CAa--GCgGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 189122 0.7 0.815352
Target:  5'- cGGacgcGCGAUAgggGUUCGCCGGCCgauaucGCGUc -3'
miRNA:   3'- cCC----UGCUGUa--CAAGCGGCCGG------UGCAc -5'
8957 5' -56.4 NC_002512.2 + 188636 0.67 0.919626
Target:  5'- cGGGCcGCAaGggCGCCGGCgGCGg- -3'
miRNA:   3'- cCCUGcUGUaCaaGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 184809 0.69 0.869495
Target:  5'- gGGGA-GACccuuccgCGCCGGCCGCGa- -3'
miRNA:   3'- -CCCUgCUGuacaa--GCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 182213 0.7 0.8236
Target:  5'- cGGGugGaACAgcacGUUCGgCGGCgcCACGUGc -3'
miRNA:   3'- -CCCugC-UGUa---CAAGCgGCCG--GUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 169556 0.7 0.831688
Target:  5'- -cGGCGGCGUGgccuUCGCCGGCgucucCGCGUc -3'
miRNA:   3'- ccCUGCUGUACa---AGCGGCCG-----GUGCAc -5'
8957 5' -56.4 NC_002512.2 + 166451 0.67 0.939501
Target:  5'- gGGGGCGACGg---CGCCGGgCuCGa- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCgGuGCac -5'
8957 5' -56.4 NC_002512.2 + 164467 0.68 0.883283
Target:  5'- gGGGGCGACGaccgccCGCCGaGCUACGa- -3'
miRNA:   3'- -CCCUGCUGUacaa--GCGGC-CGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 161271 0.66 0.962505
Target:  5'- cGGGCuuugccuGACGUGggcgagUCGCUGGCCuACGa- -3'
miRNA:   3'- cCCUG-------CUGUACa-----AGCGGCCGG-UGCac -5'
8957 5' -56.4 NC_002512.2 + 158966 0.72 0.697002
Target:  5'- -cGGCGGCGagcgGUUCGgCGGCCACGg- -3'
miRNA:   3'- ccCUGCUGUa---CAAGCgGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 158857 0.69 0.869495
Target:  5'- gGGGACGuCGUcgUCGaCCGGCCGgCGg- -3'
miRNA:   3'- -CCCUGCuGUAcaAGC-GGCCGGU-GCac -5'
8957 5' -56.4 NC_002512.2 + 158718 0.66 0.955156
Target:  5'- uGGACGACGUGUccuucuUCGUCGacgaccaggaaCACGUGg -3'
miRNA:   3'- cCCUGCUGUACA------AGCGGCcg---------GUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 157385 0.69 0.854923
Target:  5'- aGGGACcgGACGaGaUCGCCGGCUGCa-- -3'
miRNA:   3'- -CCCUG--CUGUaCaAGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 157169 0.68 0.902419
Target:  5'- cGGGCGGCGUGggCGgCGG-CGCGa- -3'
miRNA:   3'- cCCUGCUGUACaaGCgGCCgGUGCac -5'
8957 5' -56.4 NC_002512.2 + 155381 0.69 0.847356
Target:  5'- cGGGGCGGCGg---CGCCGGCgGgCGa- -3'
miRNA:   3'- -CCCUGCUGUacaaGCGGCCGgU-GCac -5'
8957 5' -56.4 NC_002512.2 + 153969 0.67 0.930003
Target:  5'- cGGGGucCGGCGg---CGCCGGCgGCGg- -3'
miRNA:   3'- -CCCU--GCUGUacaaGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 151869 0.69 0.862304
Target:  5'- cGGAUGACucGUGggCGCCGGCgaucCGCGg- -3'
miRNA:   3'- cCCUGCUG--UACaaGCGGCCG----GUGCac -5'
8957 5' -56.4 NC_002512.2 + 151352 0.67 0.934862
Target:  5'- -cGGCGcCAUGUUgccucaagauggCGCCGGCCgaaaACGUGc -3'
miRNA:   3'- ccCUGCuGUACAA------------GCGGCCGG----UGCAC- -5'
8957 5' -56.4 NC_002512.2 + 149232 0.66 0.952116
Target:  5'- cGGGAcCGACGgacccggCGCCGccGCCGCGg- -3'
miRNA:   3'- -CCCU-GCUGUacaa---GCGGC--CGGUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.