miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8957 5' -56.4 NC_002512.2 + 228593 0.68 0.883283
Target:  5'- -cGGCGGCAgg--CGCCGGaCCAgGUGg -3'
miRNA:   3'- ccCUGCUGUacaaGCGGCC-GGUgCAC- -5'
8957 5' -56.4 NC_002512.2 + 228100 0.67 0.930003
Target:  5'- cGGGAgCGAgGaGggCGUCGGCCGCa-- -3'
miRNA:   3'- -CCCU-GCUgUaCaaGCGGCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 227466 0.69 0.876489
Target:  5'- gGGGAgaGGCcgGgggCgGCCGGCCGCGa- -3'
miRNA:   3'- -CCCUg-CUGuaCaa-G-CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 226215 0.69 0.876489
Target:  5'- cGGGAgGACcuccgGacCGUCGGCCGCGa- -3'
miRNA:   3'- -CCCUgCUGua---CaaGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 223281 0.69 0.862304
Target:  5'- cGGGACGccgcgcgcagcuACAUGgugcCGCCGGUCGacacCGUGa -3'
miRNA:   3'- -CCCUGC------------UGUACaa--GCGGCCGGU----GCAC- -5'
8957 5' -56.4 NC_002512.2 + 221453 0.69 0.854923
Target:  5'- cGGGGCG-CGgucGUcCGaCCGGCCGCGg- -3'
miRNA:   3'- -CCCUGCuGUa--CAaGC-GGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 219324 0.68 0.896251
Target:  5'- gGGGAgagcguCGGCGUGgccCGCCGGCUgcccgGCGUc -3'
miRNA:   3'- -CCCU------GCUGUACaa-GCGGCCGG-----UGCAc -5'
8957 5' -56.4 NC_002512.2 + 219027 0.69 0.869495
Target:  5'- --uGCGACGUGcuggucuacgUCGUCGGCCGCGg- -3'
miRNA:   3'- cccUGCUGUACa---------AGCGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 217353 0.71 0.762911
Target:  5'- cGGGACGcACGaGUUCaGCauggCGGCCugGUGc -3'
miRNA:   3'- -CCCUGC-UGUaCAAG-CG----GCCGGugCAC- -5'
8957 5' -56.4 NC_002512.2 + 213079 0.66 0.955895
Target:  5'- cGGGCuACGUGcucUUCGUCGGCgGCGa- -3'
miRNA:   3'- cCCUGcUGUAC---AAGCGGCCGgUGCac -5'
8957 5' -56.4 NC_002512.2 + 212416 0.7 0.80355
Target:  5'- aGGACGACGggcgggaggucgaGUUCgggccgGCCGGCCGCGa- -3'
miRNA:   3'- cCCUGCUGUa------------CAAG------CGGCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 212235 1.11 0.003638
Target:  5'- gGGGACGACAUGUUCGCCGGCCACGUGg -3'
miRNA:   3'- -CCCUGCUGUACAAGCGGCCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 211770 0.7 0.8236
Target:  5'- cGGGAgGACGUGgagGCCcggguGGCCGCGg- -3'
miRNA:   3'- -CCCUgCUGUACaagCGG-----CCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 207785 0.69 0.854923
Target:  5'- cGGGACGGCGUcGUcUC-CCGGCCggACGa- -3'
miRNA:   3'- -CCCUGCUGUA-CA-AGcGGCCGG--UGCac -5'
8957 5' -56.4 NC_002512.2 + 206299 0.66 0.959466
Target:  5'- uGGAUcuCGUGUUCGCucucgcccagCGGCCACGc- -3'
miRNA:   3'- cCCUGcuGUACAAGCG----------GCCGGUGCac -5'
8957 5' -56.4 NC_002512.2 + 206136 0.66 0.952116
Target:  5'- cGGGGCGuCcgG-UCGCCagacggucauGGCCGUGUGg -3'
miRNA:   3'- -CCCUGCuGuaCaAGCGG----------CCGGUGCAC- -5'
8957 5' -56.4 NC_002512.2 + 205583 0.67 0.943922
Target:  5'- gGGGACG-CA-GUUCGCCccGCCGCu-- -3'
miRNA:   3'- -CCCUGCuGUaCAAGCGGc-CGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 204649 0.68 0.883283
Target:  5'- cGGGACGGCGacgcgcgGgggaUCGCCGGCgGCu-- -3'
miRNA:   3'- -CCCUGCUGUa------Ca---AGCGGCCGgUGcac -5'
8957 5' -56.4 NC_002512.2 + 197497 0.68 0.902419
Target:  5'- cGGAcaCGACGcGUUCGUgGGCCGCa-- -3'
miRNA:   3'- cCCU--GCUGUaCAAGCGgCCGGUGcac -5'
8957 5' -56.4 NC_002512.2 + 190355 0.66 0.948126
Target:  5'- -cGACGACggGggCGUCGGCC-CGg- -3'
miRNA:   3'- ccCUGCUGuaCaaGCGGCCGGuGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.