Results 61 - 80 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 44379 | 0.66 | 0.685241 |
Target: 5'- aGCGGCaggCCCCCGCgcaGCC-CgGCg- -3' miRNA: 3'- -CGCCGgcaGGGGGCGa--UGGaGgCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 135724 | 0.66 | 0.685241 |
Target: 5'- gGCGGCCuUCUUCaUGCUcagggucuGCCUCCGC-Cg -3' miRNA: 3'- -CGCCGGcAGGGG-GCGA--------UGGAGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 45337 | 0.66 | 0.694561 |
Target: 5'- -gGGCCGUCCgccggCCCGCgccgccggcugACC-CCGCg- -3' miRNA: 3'- cgCCGGCAGG-----GGGCGa----------UGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 76702 | 0.66 | 0.694561 |
Target: 5'- uGCcGCCcUCCCcaCCGCUGCCcgCCGCc- -3' miRNA: 3'- -CGcCGGcAGGG--GGCGAUGGa-GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 82991 | 0.67 | 0.609904 |
Target: 5'- uCGGCCG-CCUCCaGCUgcgccuggGCCUCCGggCg -3' miRNA: 3'- cGCCGGCaGGGGG-CGA--------UGGAGGCgaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 5989 | 0.67 | 0.609904 |
Target: 5'- cCGcGCCG-CUCCCGCU-CCUCCucCUCg -3' miRNA: 3'- cGC-CGGCaGGGGGCGAuGGAGGc-GAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 80141 | 0.67 | 0.609904 |
Target: 5'- cGgGGUCGUCCCCCuCgucguCCUCCucGCUg -3' miRNA: 3'- -CgCCGGCAGGGGGcGau---GGAGG--CGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 80591 | 0.67 | 0.619336 |
Target: 5'- cGCGGCgGUCgacgaUCUCGCccuCCUCgCGCUCc -3' miRNA: 3'- -CGCCGgCAG-----GGGGCGau-GGAG-GCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 102520 | 0.67 | 0.619336 |
Target: 5'- cGCGGCCGUcgggggucaggCCCCCGguuuccCUACCgaCUGCg- -3' miRNA: 3'- -CGCCGGCA-----------GGGGGC------GAUGGa-GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 117965 | 0.67 | 0.619336 |
Target: 5'- cGUGGaCGcUCCCCGCcugGCCgugCUGCUCg -3' miRNA: 3'- -CGCCgGCaGGGGGCGa--UGGa--GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 119386 | 0.67 | 0.647657 |
Target: 5'- cGCGGCgG-CCCugcugcagggCCGCgUGCCgCUGCUCg -3' miRNA: 3'- -CGCCGgCaGGG----------GGCG-AUGGaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 69424 | 0.67 | 0.609904 |
Target: 5'- uGCGcUCGUgCCCCGCgaaacgGCCUUCGCcCa -3' miRNA: 3'- -CGCcGGCAgGGGGCGa-----UGGAGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 25223 | 0.67 | 0.608961 |
Target: 5'- aGCGaGCCGccggcgaUCCCCCGCgcgucGCCgucCCGgUCc -3' miRNA: 3'- -CGC-CGGC-------AGGGGGCGa----UGGa--GGCgAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 5631 | 0.67 | 0.628776 |
Target: 5'- cGCGGgCGUCgggcgccgaCCCGCcuCCcCCGCUCa -3' miRNA: 3'- -CGCCgGCAGg--------GGGCGauGGaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 129874 | 0.67 | 0.632553 |
Target: 5'- gGCGGCgGgggauucgccgucgCCCUCGCcgACgaUCCGCUCu -3' miRNA: 3'- -CGCCGgCa-------------GGGGGCGa-UGg-AGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 118995 | 0.67 | 0.638219 |
Target: 5'- uGCGGCUGgCCUCCGCcaagcGCCUCCu--- -3' miRNA: 3'- -CGCCGGCaGGGGGCGa----UGGAGGcgag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 201993 | 0.67 | 0.65143 |
Target: 5'- uGCGacaagcCCGUCCCUCGgUgucacuggaauugaaACCUCCGUUCc -3' miRNA: 3'- -CGCc-----GGCAGGGGGCgA---------------UGGAGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 133898 | 0.67 | 0.638219 |
Target: 5'- cCGGCgGUCCCgggCGCUggccuACCUCCuGCUg -3' miRNA: 3'- cGCCGgCAGGGg--GCGA-----UGGAGG-CGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 110333 | 0.67 | 0.647657 |
Target: 5'- cGCGGuCCGcccggUCCCCGCU-CC-CCGCc- -3' miRNA: 3'- -CGCC-GGCa----GGGGGCGAuGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 118703 | 0.67 | 0.619336 |
Target: 5'- cGUGGgCuUCCCCCGCcug--CCGCUCg -3' miRNA: 3'- -CGCCgGcAGGGGGCGauggaGGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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