miRNA display CGI


Results 41 - 60 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 74595 0.66 0.675884
Target:  5'- -aGGCCGgggCCCUCcgucggcucgaGCcGCCUCgGCUCc -3'
miRNA:   3'- cgCCGGCa--GGGGG-----------CGaUGGAGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 97481 0.66 0.694561
Target:  5'- cGCGGUCGaUCCCCCcaucacguucGUccacgACUUCCGCg- -3'
miRNA:   3'- -CGCCGGC-AGGGGG----------CGa----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 100699 0.66 0.703836
Target:  5'- gGCGGCC-UCCUCCGCagcguCC-CCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGau---GGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 21080 0.66 0.713059
Target:  5'- gGCGGCgGUCCCgcuCCGggGCgaCCGC-Cg -3'
miRNA:   3'- -CGCCGgCAGGG---GGCgaUGgaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 134345 0.66 0.713059
Target:  5'- cGCGGCCGagcUCCagaCCCGC-ACCguccacgagCUGUUCg -3'
miRNA:   3'- -CGCCGGC---AGG---GGGCGaUGGa--------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 149176 0.66 0.694561
Target:  5'- cGCGGgcCCGcgcgCCCUCGCcccCCggacgCCGCUCg -3'
miRNA:   3'- -CGCC--GGCa---GGGGGCGau-GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 188680 0.66 0.663676
Target:  5'- cGCGGCgGUCUCggggacgaucacggCgGCU-CCUCCGcCUCg -3'
miRNA:   3'- -CGCCGgCAGGG--------------GgCGAuGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 129114 0.66 0.657086
Target:  5'- gGCgGGCgGUCCUCUGCgacuacaGCCUCgCGCa- -3'
miRNA:   3'- -CG-CCGgCAGGGGGCGa------UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 75164 0.66 0.656144
Target:  5'- cGCGGacgcaacgccguuCCGUCgCgCCGCUcgacGCCggacggCCGCUCg -3'
miRNA:   3'- -CGCC-------------GGCAGgG-GGCGA----UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 101477 0.66 0.666497
Target:  5'- cCGGCCGagacCCCCCGUccCCggacgagUCGCUCu -3'
miRNA:   3'- cGCCGGCa---GGGGGCGauGGa------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 197340 0.66 0.684307
Target:  5'- gGCGGCUGgagaagaUCCCCCaCUGCCcgcacgUCUGCa- -3'
miRNA:   3'- -CGCCGGC-------AGGGGGcGAUGG------AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 113166 0.66 0.670255
Target:  5'- cGCGGCCGggcgggacgcgaCCgGCgucGCCgUCCGCUCc -3'
miRNA:   3'- -CGCCGGCagg---------GGgCGa--UGG-AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 187574 0.66 0.666497
Target:  5'- cGCGcGUCGagauccCCCCCGCUcCCUCUGUc- -3'
miRNA:   3'- -CGC-CGGCa-----GGGGGCGAuGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 224408 0.66 0.694561
Target:  5'- cGCGcGCCacgagGUCCCCgaguuCUGCCcccuUCCGCUCu -3'
miRNA:   3'- -CGC-CGG-----CAGGGGgc---GAUGG----AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 192909 0.66 0.694561
Target:  5'- cGCGGCgGUCCagaGCcGCCUCCGa-- -3'
miRNA:   3'- -CGCCGgCAGGgggCGaUGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 146328 0.66 0.694561
Target:  5'- aCGGCCGcUCCgUCCGCaug--CCGCUCa -3'
miRNA:   3'- cGCCGGC-AGG-GGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 201175 0.66 0.685241
Target:  5'- uUGaGCCGggacCCCUCGCUGCa-CCGCUUc -3'
miRNA:   3'- cGC-CGGCa---GGGGGCGAUGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 158315 0.66 0.685241
Target:  5'- cGCGGUCGUCCggcgcgagUCCGCgcuccggACCgucuucgacacCCGCUCc -3'
miRNA:   3'- -CGCCGGCAGG--------GGGCGa------UGGa----------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 184597 0.66 0.700131
Target:  5'- gGCGGuCCGUCCgaCCCGCgagacgagcgcgaGCCcCCGC-Cg -3'
miRNA:   3'- -CGCC-GGCAGG--GGGCGa------------UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 191668 0.66 0.694561
Target:  5'- -aGGCCGU-CUCCGCUAUCgUCGCg- -3'
miRNA:   3'- cgCCGGCAgGGGGCGAUGGaGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.