miRNA display CGI


Results 41 - 60 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 109258 0.71 0.383049
Target:  5'- cCGG-CGUCCCgucCCGCcGCCUCcCGCUCu -3'
miRNA:   3'- cGCCgGCAGGG---GGCGaUGGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 7472 0.71 0.383049
Target:  5'- cGCGGCUGccggCCCCCGCcgaaGCCgcggCGCUCc -3'
miRNA:   3'- -CGCCGGCa---GGGGGCGa---UGGag--GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 184682 0.71 0.386116
Target:  5'- gGCGGCCGUCCgCgCCGCcggucccggucgagACCUCCGa-- -3'
miRNA:   3'- -CGCCGGCAGG-G-GGCGa-------------UGGAGGCgag -5'
8959 3' -63.6 NC_002512.2 + 59057 0.71 0.390748
Target:  5'- -gGGUCG-CCgCCGCUGCCgCCGCUg -3'
miRNA:   3'- cgCCGGCaGGgGGCGAUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 220388 0.71 0.398547
Target:  5'- uGgGGCCGgCCgUCGuCUACCcgCCGCUCg -3'
miRNA:   3'- -CgCCGGCaGGgGGC-GAUGGa-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 207530 0.71 0.398547
Target:  5'- cGgGGCCGcgUCCuCCCGCUGcgacuCCUCC-CUCg -3'
miRNA:   3'- -CgCCGGC--AGG-GGGCGAU-----GGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 39671 0.71 0.398547
Target:  5'- cGUGGCCGUCCCggacgaccgcgCCGCcgACCuUCUGCa- -3'
miRNA:   3'- -CGCCGGCAGGG-----------GGCGa-UGG-AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 134090 0.71 0.398547
Target:  5'- uCGGauccgCGUCCCCgGC-GCCUaCCGCUCg -3'
miRNA:   3'- cGCCg----GCAGGGGgCGaUGGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 186792 0.71 0.414441
Target:  5'- uCGaGCCGU-CCCCGCUGCUcgCCGCg- -3'
miRNA:   3'- cGC-CGGCAgGGGGCGAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 149650 0.71 0.422533
Target:  5'- cCGGCCcgcacGUCCCggaGCUGCCcuaUCCGCUCc -3'
miRNA:   3'- cGCCGG-----CAGGGgg-CGAUGG---AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 131785 0.71 0.422533
Target:  5'- -aGGUCGUCCCgCGCcguCCccgucaUCCGCUCg -3'
miRNA:   3'- cgCCGGCAGGGgGCGau-GG------AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 31868 0.71 0.422533
Target:  5'- cGCGcGCgCGUCCCUCGCccccguCCgucgcCCGCUCg -3'
miRNA:   3'- -CGC-CG-GCAGGGGGCGau----GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 3020 0.71 0.422533
Target:  5'- gGCGGCCGcuUCUCCCuCU--UUCCGCUCg -3'
miRNA:   3'- -CGCCGGC--AGGGGGcGAugGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 135250 0.7 0.430719
Target:  5'- -aGGCCGUCgUCCGC-GCCg-CGCUCg -3'
miRNA:   3'- cgCCGGCAGgGGGCGaUGGagGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 102794 0.7 0.430719
Target:  5'- cGCcGCCG-CCgCCGC--CCUCCGCUCc -3'
miRNA:   3'- -CGcCGGCaGGgGGCGauGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 132028 0.7 0.438997
Target:  5'- gGCGGguCCGUCUCggUCGUcGCCUCCGCUUc -3'
miRNA:   3'- -CGCC--GGCAGGG--GGCGaUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 192587 0.7 0.438997
Target:  5'- aGCGGaCCGUCCCgCUGCUGCggCgCGCg- -3'
miRNA:   3'- -CGCC-GGCAGGG-GGCGAUGgaG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 219054 0.7 0.438997
Target:  5'- cGCGGCgCGgggCuCCCCGCggGCUUCgaGCUCg -3'
miRNA:   3'- -CGCCG-GCa--G-GGGGCGa-UGGAGg-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 150686 0.7 0.438997
Target:  5'- cGCGGCgGUCgCCCCGacggACCgUUgGCUCu -3'
miRNA:   3'- -CGCCGgCAG-GGGGCga--UGG-AGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 145423 0.7 0.444846
Target:  5'- uCGGCuCGUCCgCCGCggugcuggacgagauCCUCCGcCUCa -3'
miRNA:   3'- cGCCG-GCAGGgGGCGau-------------GGAGGC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.