miRNA display CGI


Results 21 - 40 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 27360 0.73 0.298778
Target:  5'- -gGGUCGUccgCCCCCGCcgccGCCUCCGcCUCc -3'
miRNA:   3'- cgCCGGCA---GGGGGCGa---UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 99754 0.73 0.298778
Target:  5'- cGCGGCCGcgacaccaCCCCGg-GCCUCCaGCUCc -3'
miRNA:   3'- -CGCCGGCag------GGGGCgaUGGAGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 101609 0.73 0.309135
Target:  5'- gGCGGCCGUCggCCCgGC-GCCgggacgcgagucgCCGCUCg -3'
miRNA:   3'- -CGCCGGCAG--GGGgCGaUGGa------------GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 135360 0.73 0.314415
Target:  5'- aCGGCgGUCCCCCuGCgucuacagcaccuCCUaCCGCUCa -3'
miRNA:   3'- cGCCGgCAGGGGG-CGau-----------GGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 191481 0.73 0.31842
Target:  5'- aGCGGCCGUCUUCuCGUacagACC-CUGCUCa -3'
miRNA:   3'- -CGCCGGCAGGGG-GCGa---UGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 145615 0.73 0.31842
Target:  5'- gGCGGgCGUUCggCCCGCUGCCcgccuUCCGCgUCg -3'
miRNA:   3'- -CGCCgGCAGG--GGGCGAUGG-----AGGCG-AG- -5'
8959 3' -63.6 NC_002512.2 + 208621 0.73 0.31842
Target:  5'- uGCuGUCGUCCCCCGCU--C-CCGCUCc -3'
miRNA:   3'- -CGcCGGCAGGGGGCGAugGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 8472 0.73 0.31842
Target:  5'- gGCGGCCGUCggacagaCCCGCcGCCUCCccGCcCg -3'
miRNA:   3'- -CGCCGGCAGg------GGGCGaUGGAGG--CGaG- -5'
8959 3' -63.6 NC_002512.2 + 1079 0.73 0.31842
Target:  5'- gGCGGCCgGUCuCCCCGUc-CCUCC-CUCu -3'
miRNA:   3'- -CGCCGG-CAG-GGGGCGauGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 3163 0.73 0.32518
Target:  5'- cGCcGUCGUCgCCCGCgGCCUCCcgucGCUCg -3'
miRNA:   3'- -CGcCGGCAGgGGGCGaUGGAGG----CGAG- -5'
8959 3' -63.6 NC_002512.2 + 75069 0.73 0.32518
Target:  5'- aCuGCCG-CCgCCGCUGCCUCCgucGCUCa -3'
miRNA:   3'- cGcCGGCaGGgGGCGAUGGAGG---CGAG- -5'
8959 3' -63.6 NC_002512.2 + 139323 0.72 0.332046
Target:  5'- cGgGGCCGUCgCCCuCGCccucguCCUCcCGCUCc -3'
miRNA:   3'- -CgCCGGCAG-GGG-GCGau----GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 116630 0.72 0.332046
Target:  5'- cCGGCCGcCCCCCucGCUGCCgagGCUCc -3'
miRNA:   3'- cGCCGGCaGGGGG--CGAUGGaggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 96894 0.72 0.339017
Target:  5'- gGgGGCCGgguUCCCCUGCUACUacCCGCg- -3'
miRNA:   3'- -CgCCGGC---AGGGGGCGAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 223978 0.72 0.346095
Target:  5'- cUGGCCGuaUCCCCCGCgcGCC-CCGC-Cg -3'
miRNA:   3'- cGCCGGC--AGGGGGCGa-UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 107998 0.72 0.353277
Target:  5'- cGCGucGCCGagcgUCCCCCGCgACCUCCccCUCg -3'
miRNA:   3'- -CGC--CGGC----AGGGGGCGaUGGAGGc-GAG- -5'
8959 3' -63.6 NC_002512.2 + 211982 0.72 0.367956
Target:  5'- cGCGGCCGUCguCCUCGggGCCgCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAG--GGGGCgaUGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 172849 0.72 0.367956
Target:  5'- cCGGUCGUCggaCGCgGCCUCCGCUCc -3'
miRNA:   3'- cGCCGGCAGgggGCGaUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 28243 0.72 0.373944
Target:  5'- cGgGGCCGUCgCgCCGCgaguacgacggcGCCUaCCGCUCg -3'
miRNA:   3'- -CgCCGGCAGgG-GGCGa-----------UGGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 213394 0.71 0.383049
Target:  5'- uCGGuCCGgCCCCCGCUgcGCCauaCGCUCu -3'
miRNA:   3'- cGCC-GGCaGGGGGCGA--UGGag-GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.