miRNA display CGI


Results 21 - 40 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 8472 0.73 0.31842
Target:  5'- gGCGGCCGUCggacagaCCCGCcGCCUCCccGCcCg -3'
miRNA:   3'- -CGCCGGCAGg------GGGCGaUGGAGG--CGaG- -5'
8959 3' -63.6 NC_002512.2 + 12788 0.74 0.256627
Target:  5'- gGCGGCg--CCCCCGCUGCCcCUGCg- -3'
miRNA:   3'- -CGCCGgcaGGGGGCGAUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 16538 0.66 0.666497
Target:  5'- cGCGGgCGUCCCCC--UGgCUCCGgauguaCUCg -3'
miRNA:   3'- -CGCCgGCAGGGGGcgAUgGAGGC------GAG- -5'
8959 3' -63.6 NC_002512.2 + 17453 0.66 0.694561
Target:  5'- cGCGGCCGgCCggCCCGaacucgACCUcCCGCcCg -3'
miRNA:   3'- -CGCCGGCaGG--GGGCga----UGGA-GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 18093 0.69 0.490474
Target:  5'- cGCGGCgGgacggCCCCCGCggccacccggGCCUCCacgucCUCc -3'
miRNA:   3'- -CGCCGgCa----GGGGGCGa---------UGGAGGc----GAG- -5'
8959 3' -63.6 NC_002512.2 + 21080 0.66 0.713059
Target:  5'- gGCGGCgGUCCCgcuCCGggGCgaCCGC-Cg -3'
miRNA:   3'- -CGCCGgCAGGG---GGCgaUGgaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 24382 0.66 0.685241
Target:  5'- aGUcGUCGUCCUCCGCgacGCCgucgUCCGcCUCu -3'
miRNA:   3'- -CGcCGGCAGGGGGCGa--UGG----AGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 25120 0.68 0.544584
Target:  5'- cCGGUCGUCCCCgCGCcccagGCCgggaUCGCUg -3'
miRNA:   3'- cGCCGGCAGGGG-GCGa----UGGa---GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 25223 0.67 0.608961
Target:  5'- aGCGaGCCGccggcgaUCCCCCGCgcgucGCCgucCCGgUCc -3'
miRNA:   3'- -CGC-CGGC-------AGGGGGCGa----UGGa--GGCgAG- -5'
8959 3' -63.6 NC_002512.2 + 27360 0.73 0.298778
Target:  5'- -gGGUCGUccgCCCCCGCcgccGCCUCCGcCUCc -3'
miRNA:   3'- cgCCGGCA---GGGGGCGa---UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 28243 0.72 0.373944
Target:  5'- cGgGGCCGUCgCgCCGCgaguacgacggcGCCUaCCGCUCg -3'
miRNA:   3'- -CgCCGGCAGgG-GGCGa-----------UGGA-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 29050 0.75 0.234801
Target:  5'- aCGcGCCGcgCCCCCGCUgACCUUCGCg- -3'
miRNA:   3'- cGC-CGGCa-GGGGGCGA-UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 31868 0.71 0.422533
Target:  5'- cGCGcGCgCGUCCCUCGCccccguCCgucgcCCGCUCg -3'
miRNA:   3'- -CGC-CG-GCAGGGGGCGau----GGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 33475 0.68 0.563067
Target:  5'- cCGGCCGccgcCCCCCGCguCC-CCGCg- -3'
miRNA:   3'- cGCCGGCa---GGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 33865 0.69 0.508254
Target:  5'- gGCGaGCCgGUCCCCCcCUucGCgUCCGCg- -3'
miRNA:   3'- -CGC-CGG-CAGGGGGcGA--UGgAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 35261 0.67 0.600486
Target:  5'- -gGGCagGUCCCCCGCggcgACggCCGCg- -3'
miRNA:   3'- cgCCGg-CAGGGGGCGa---UGgaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 37239 0.68 0.563067
Target:  5'- gGCaGCCG-CCCCCGCgaGCCguugCCGUa- -3'
miRNA:   3'- -CGcCGGCaGGGGGCGa-UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 37276 0.66 0.670255
Target:  5'- gGCcGCCGUCgCCCGCcgcggcgcGCCgcagcagcgggacggUCCGCUCc -3'
miRNA:   3'- -CGcCGGCAGgGGGCGa-------UGG---------------AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 38592 0.69 0.499328
Target:  5'- cCGGCCcccGUCCCCCGCc-CCgCCGCc- -3'
miRNA:   3'- cGCCGG---CAGGGGGCGauGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 39671 0.71 0.398547
Target:  5'- cGUGGCCGUCCCggacgaccgcgCCGCcgACCuUCUGCa- -3'
miRNA:   3'- -CGCCGGCAGGG-----------GGCGa-UGG-AGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.