miRNA display CGI


Results 21 - 40 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 219054 0.7 0.438997
Target:  5'- cGCGGCgCGgggCuCCCCGCggGCUUCgaGCUCg -3'
miRNA:   3'- -CGCCG-GCa--G-GGGGCGa-UGGAGg-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 218289 0.68 0.572373
Target:  5'- uCGGCCucgggGUCCCCgGCccuggGCggCCGCUCg -3'
miRNA:   3'- cGCCGG-----CAGGGGgCGa----UGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 216211 0.68 0.553802
Target:  5'- cGCGGCCGUCgCCUCGUccgggaGCUggagCCGCg- -3'
miRNA:   3'- -CGCCGGCAG-GGGGCGa-----UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 215021 0.69 0.481692
Target:  5'- --cGCCuGUCCCgCGaCUACCUCUGCUg -3'
miRNA:   3'- cgcCGG-CAGGGgGC-GAUGGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 214934 0.66 0.694561
Target:  5'- cGCGGCuuCGUCCuCCCGUgGCCgcggaCGCa- -3'
miRNA:   3'- -CGCCG--GCAGG-GGGCGaUGGag---GCGag -5'
8959 3' -63.6 NC_002512.2 + 214235 0.66 0.711219
Target:  5'- gGCGGCuCGUcggcucgCCgCCCGCgGCCgaggaguUCCGCUg -3'
miRNA:   3'- -CGCCG-GCA-------GG-GGGCGaUGG-------AGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 213394 0.71 0.383049
Target:  5'- uCGGuCCGgCCCCCGCUgcGCCauaCGCUCu -3'
miRNA:   3'- cGCC-GGCaGGGGGCGA--UGGag-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 213002 0.68 0.552878
Target:  5'- cGCGGCCGUCgggCCCGggGCCcucucgaggugcgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAGg--GGGCgaUGG-------------AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 211982 0.72 0.367956
Target:  5'- cGCGGCCGUCguCCUCGggGCCgCCGC-Cg -3'
miRNA:   3'- -CGCCGGCAG--GGGGCgaUGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 211799 0.7 0.473855
Target:  5'- gGgGGCCGUCCCgCCGCggcgcaccuauuucgACUUCCuggaccccggGCUCu -3'
miRNA:   3'- -CgCCGGCAGGG-GGCGa--------------UGGAGG----------CGAG- -5'
8959 3' -63.6 NC_002512.2 + 211041 1.11 0.000769
Target:  5'- cGCGGCCGUCCCCCGCUACCUCCGCUCg -3'
miRNA:   3'- -CGCCGGCAGGGGGCGAUGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 208621 0.73 0.31842
Target:  5'- uGCuGUCGUCCCCCGCU--C-CCGCUCc -3'
miRNA:   3'- -CGcCGGCAGGGGGCGAugGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 207657 0.66 0.670255
Target:  5'- gGCGGCCGUgguggcgucccgggcUCuCCCGCcgGCCgaagCGCUCc -3'
miRNA:   3'- -CGCCGGCA---------------GG-GGGCGa-UGGag--GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 207530 0.71 0.398547
Target:  5'- cGgGGCCGcgUCCuCCCGCUGcgacuCCUCC-CUCg -3'
miRNA:   3'- -CgCCGGC--AGG-GGGCGAU-----GGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 205032 0.67 0.628776
Target:  5'- cGgGGCCGcgUCCgCCGCcgACCggCCGCg- -3'
miRNA:   3'- -CgCCGGC--AGGgGGCGa-UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 204676 0.66 0.703836
Target:  5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3'
miRNA:   3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 202023 0.69 0.517246
Target:  5'- cGgGGCCGggUCCCCCGCcgg-UCCgGCUCg -3'
miRNA:   3'- -CgCCGGC--AGGGGGCGauggAGG-CGAG- -5'
8959 3' -63.6 NC_002512.2 + 201993 0.67 0.65143
Target:  5'- uGCGacaagcCCGUCCCUCGgUgucacuggaauugaaACCUCCGUUCc -3'
miRNA:   3'- -CGCc-----GGCAGGGGGCgA---------------UGGAGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 201175 0.66 0.685241
Target:  5'- uUGaGCCGggacCCCUCGCUGCa-CCGCUUc -3'
miRNA:   3'- cGC-CGGCa---GGGGGCGAUGgaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 200514 0.7 0.454972
Target:  5'- cGgGGCuCGUCCUCaCGCUGCUguccgugUCCGuCUCg -3'
miRNA:   3'- -CgCCG-GCAGGGG-GCGAUGG-------AGGC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.