miRNA display CGI


Results 1 - 20 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 229792 0.69 0.508254
Target:  5'- cCGGCCuccucucCCCCCGCcGCCUCuCGcCUCc -3'
miRNA:   3'- cGCCGGca-----GGGGGCGaUGGAG-GC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 229721 0.68 0.591088
Target:  5'- cCGGCC-UCCUCUGCcGCCUCCuGC-Cg -3'
miRNA:   3'- cGCCGGcAGGGGGCGaUGGAGG-CGaG- -5'
8959 3' -63.6 NC_002512.2 + 227847 0.66 0.703836
Target:  5'- cGCaGCCGaUCaCCCUGCUGucgcuCCUCCuggugccgGCUCa -3'
miRNA:   3'- -CGcCGGC-AG-GGGGCGAU-----GGAGG--------CGAG- -5'
8959 3' -63.6 NC_002512.2 + 227793 0.75 0.251019
Target:  5'- cGCGGCCGUaCCgCCCGCUcccGCCcggcguggacUCCGCg- -3'
miRNA:   3'- -CGCCGGCA-GG-GGGCGA---UGG----------AGGCGag -5'
8959 3' -63.6 NC_002512.2 + 226817 0.69 0.499328
Target:  5'- cGUGGCCGccgCCgCCGCcGCgUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCa--GGgGGCGaUGgAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 225810 0.66 0.694561
Target:  5'- gGCGGCCGgguggCCUgggaccucgagCCGCgggggAUCgagCCGCUCc -3'
miRNA:   3'- -CGCCGGCa----GGG-----------GGCGa----UGGa--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 225681 0.68 0.563067
Target:  5'- cGCGGCCGcUCCCaCCG--AUCUCCGgcgucCUCa -3'
miRNA:   3'- -CGCCGGC-AGGG-GGCgaUGGAGGC-----GAG- -5'
8959 3' -63.6 NC_002512.2 + 225034 0.66 0.713059
Target:  5'- cGCGGCgaa-CCCCGCgaugGCCg-CGCUCc -3'
miRNA:   3'- -CGCCGgcagGGGGCGa---UGGagGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 224720 0.67 0.600486
Target:  5'- cCGGCCGcCgCCCCGgUcgcGCCgcugCCGUUCu -3'
miRNA:   3'- cGCCGGCaG-GGGGCgA---UGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 224408 0.66 0.694561
Target:  5'- cGCGcGCCacgagGUCCCCgaguuCUGCCcccuUCCGCUCu -3'
miRNA:   3'- -CGC-CGG-----CAGGGGgc---GAUGG----AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 223978 0.72 0.346095
Target:  5'- cUGGCCGuaUCCCCCGCgcGCC-CCGC-Cg -3'
miRNA:   3'- cGCCGGC--AGGGGGCGa-UGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 223947 0.68 0.563067
Target:  5'- cGCGGCUGUgaCCCCUGCgucCCUaUCGCa- -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGau-GGA-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 223470 0.67 0.647657
Target:  5'- aCGGCCGccuUCCCCagCGCcGCCgCCGcCUCc -3'
miRNA:   3'- cGCCGGC---AGGGG--GCGaUGGaGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 222591 0.67 0.638219
Target:  5'- cGCGGaggaggccuguCCGgCCCCCGggGCCUCgCGCcCg -3'
miRNA:   3'- -CGCC-----------GGCaGGGGGCgaUGGAG-GCGaG- -5'
8959 3' -63.6 NC_002512.2 + 222517 0.66 0.703836
Target:  5'- cUGGCCG-CCCgCCGCgGCCgCCGUc- -3'
miRNA:   3'- cGCCGGCaGGG-GGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 222130 0.68 0.581715
Target:  5'- cGCGGCCGacuaccgCCCCgGCUccGCCcccgaggaCCGCUa -3'
miRNA:   3'- -CGCCGGCa------GGGGgCGA--UGGa-------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 220388 0.71 0.398547
Target:  5'- uGgGGCCGgCCgUCGuCUACCcgCCGCUCg -3'
miRNA:   3'- -CgCCGGCaGGgGGC-GAUGGa-GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 219729 0.66 0.657086
Target:  5'- gGCGGCCcccGUgCCUCGCcgACCUCUucuGCUg -3'
miRNA:   3'- -CGCCGG---CAgGGGGCGa-UGGAGG---CGAg -5'
8959 3' -63.6 NC_002512.2 + 219438 0.7 0.464364
Target:  5'- gGCGGCC-UCCUCCGC-GCCcCCGUg- -3'
miRNA:   3'- -CGCCGGcAGGGGGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 219373 0.68 0.591088
Target:  5'- uGC-GCCucugCUCCCuggGCUGCCUCCGCUg -3'
miRNA:   3'- -CGcCGGca--GGGGG---CGAUGGAGGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.