Results 21 - 40 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 920 | 0.66 | 0.657086 |
Target: 5'- uGCu-CCGUCUCCCGC--CCUCCGCc- -3' miRNA: 3'- -CGccGGCAGGGGGCGauGGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 17453 | 0.66 | 0.694561 |
Target: 5'- cGCGGCCGgCCggCCCGaacucgACCUcCCGCcCg -3' miRNA: 3'- -CGCCGGCaGG--GGGCga----UGGA-GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 179998 | 0.66 | 0.703836 |
Target: 5'- cGUGGCCcgugaUCCCCCaGCgggACUcgaUCaCGCUCg -3' miRNA: 3'- -CGCCGGc----AGGGGG-CGa--UGG---AG-GCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 16538 | 0.66 | 0.666497 |
Target: 5'- cGCGGgCGUCCCCC--UGgCUCCGgauguaCUCg -3' miRNA: 3'- -CGCCgGCAGGGGGcgAUgGAGGC------GAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 73365 | 0.66 | 0.675884 |
Target: 5'- cGCcGCCGgaCCCCCGC-GCC-CCGC-Cg -3' miRNA: 3'- -CGcCGGCa-GGGGGCGaUGGaGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 70957 | 0.66 | 0.713059 |
Target: 5'- gGCcGCCGgcgCCCCCGCcgaaGCCguacucggCCGCg- -3' miRNA: 3'- -CGcCGGCa--GGGGGCGa---UGGa-------GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 134345 | 0.66 | 0.713059 |
Target: 5'- cGCGGCCGagcUCCagaCCCGC-ACCguccacgagCUGUUCg -3' miRNA: 3'- -CGCCGGC---AGG---GGGCGaUGGa--------GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 204676 | 0.66 | 0.703836 |
Target: 5'- gGCGGCuCG-CUCCCGCU-CCgUCGCg- -3' miRNA: 3'- -CGCCG-GCaGGGGGCGAuGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 60825 | 0.66 | 0.713059 |
Target: 5'- cGCcGCCGcggagCCCCuCGCgcccgaggagaUGCCggcgCCGCUCg -3' miRNA: 3'- -CGcCGGCa----GGGG-GCG-----------AUGGa---GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 114485 | 0.66 | 0.713059 |
Target: 5'- aUGGCCGUCa-CCGCguUCUCCuuGCUCa -3' miRNA: 3'- cGCCGGCAGggGGCGauGGAGG--CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 1820 | 0.66 | 0.685241 |
Target: 5'- aGCccGUCGUCUCCCGCgccgcaGCCgUCCGCg- -3' miRNA: 3'- -CGc-CGGCAGGGGGCGa-----UGG-AGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 135724 | 0.66 | 0.685241 |
Target: 5'- gGCGGCCuUCUUCaUGCUcagggucuGCCUCCGC-Cg -3' miRNA: 3'- -CGCCGGcAGGGG-GCGA--------UGGAGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 62621 | 0.66 | 0.672132 |
Target: 5'- gGCGGCCagcUUCCCCGCcaccuugaccaggACCUCuCGCcCg -3' miRNA: 3'- -CGCCGGc--AGGGGGCGa------------UGGAG-GCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 97757 | 0.66 | 0.666497 |
Target: 5'- gGCGGUCGUCUugCUCGCgGCCUaCCGggCg -3' miRNA: 3'- -CGCCGGCAGG--GGGCGaUGGA-GGCgaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 21080 | 0.66 | 0.713059 |
Target: 5'- gGCGGCgGUCCCgcuCCGggGCgaCCGC-Cg -3' miRNA: 3'- -CGCCGgCAGGG---GGCgaUGgaGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 45337 | 0.66 | 0.694561 |
Target: 5'- -gGGCCGUCCgccggCCCGCgccgccggcugACC-CCGCg- -3' miRNA: 3'- cgCCGGCAGG-----GGGCGa----------UGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 76942 | 0.66 | 0.666497 |
Target: 5'- cGgGGaCCG-CUCCCGCUgaccgACCggggaCCGCUCc -3' miRNA: 3'- -CgCC-GGCaGGGGGCGA-----UGGa----GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 4344 | 0.66 | 0.675884 |
Target: 5'- aGaaGUCGUCCUCCGC-GCCUcCCGC-Cg -3' miRNA: 3'- -CgcCGGCAGGGGGCGaUGGA-GGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 76702 | 0.66 | 0.694561 |
Target: 5'- uGCcGCCcUCCCcaCCGCUGCCcgCCGCc- -3' miRNA: 3'- -CGcCGGcAGGG--GGCGAUGGa-GGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 191668 | 0.66 | 0.694561 |
Target: 5'- -aGGCCGU-CUCCGCUAUCgUCGCg- -3' miRNA: 3'- cgCCGGCAgGGGGCGAUGGaGGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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