miRNA display CGI


Results 41 - 60 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 39994 0.67 0.638219
Target:  5'- cGCcGCCGUCCUcgCCGCcGCCgucUCCGC-Cg -3'
miRNA:   3'- -CGcCGGCAGGG--GGCGaUGG---AGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 40116 0.69 0.505569
Target:  5'- aCGGCgggaggacggauuuUGUCCCCCGCcucgaagACCUCCuCUCc -3'
miRNA:   3'- cGCCG--------------GCAGGGGGCGa------UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 44379 0.66 0.685241
Target:  5'- aGCGGCaggCCCCCGCgcaGCC-CgGCg- -3'
miRNA:   3'- -CGCCGgcaGGGGGCGa--UGGaGgCGag -5'
8959 3' -63.6 NC_002512.2 + 45337 0.66 0.694561
Target:  5'- -gGGCCGUCCgccggCCCGCgccgccggcugACC-CCGCg- -3'
miRNA:   3'- cgCCGGCAGG-----GGGCGa----------UGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 46017 0.66 0.713059
Target:  5'- aCGGUCGUCgUgUCGCUGaauCCUuuGCUCg -3'
miRNA:   3'- cGCCGGCAG-GgGGCGAU---GGAggCGAG- -5'
8959 3' -63.6 NC_002512.2 + 48855 0.68 0.591088
Target:  5'- uGCGGCCuccugCCCaggaCGCggGCCUCC-CUCu -3'
miRNA:   3'- -CGCCGGca---GGGg---GCGa-UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 55560 0.69 0.490474
Target:  5'- cGCGGCgGaCCCCCGCcUGCUgacccacgucCCGCUg -3'
miRNA:   3'- -CGCCGgCaGGGGGCG-AUGGa---------GGCGAg -5'
8959 3' -63.6 NC_002512.2 + 57233 0.73 0.292442
Target:  5'- cGCGGgCGUCCCcgcaggCCGCgUACCgCCGUUCg -3'
miRNA:   3'- -CGCCgGCAGGG------GGCG-AUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 58048 0.66 0.675884
Target:  5'- cGCGGCCGgaccgUCCCgCGgUACCggaugCCGggCa -3'
miRNA:   3'- -CGCCGGC-----AGGGgGCgAUGGa----GGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 59057 0.71 0.390748
Target:  5'- -gGGUCG-CCgCCGCUGCCgCCGCUg -3'
miRNA:   3'- cgCCGGCaGGgGGCGAUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 60825 0.66 0.713059
Target:  5'- cGCcGCCGcggagCCCCuCGCgcccgaggagaUGCCggcgCCGCUCg -3'
miRNA:   3'- -CGcCGGCa----GGGG-GCG-----------AUGGa---GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 61769 0.75 0.251019
Target:  5'- cGCGGCCGggCCCCUcucCUACC-CUGCUCc -3'
miRNA:   3'- -CGCCGGCa-GGGGGc--GAUGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 62621 0.66 0.672132
Target:  5'- gGCGGCCagcUUCCCCGCcaccuugaccaggACCUCuCGCcCg -3'
miRNA:   3'- -CGCCGGc--AGGGGGCGa------------UGGAG-GCGaG- -5'
8959 3' -63.6 NC_002512.2 + 65428 0.68 0.581715
Target:  5'- gGCGGUCGUcgCCCCCGCcgagggcGCCgagCgGCUUc -3'
miRNA:   3'- -CGCCGGCA--GGGGGCGa------UGGa--GgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 68994 0.69 0.517246
Target:  5'- cCGGCCG--CCCCGCUucccgaacCCUCCGC-Cg -3'
miRNA:   3'- cGCCGGCagGGGGCGAu-------GGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 69115 0.68 0.591088
Target:  5'- uGC-GCCGg-CCCCGCUccgggACCUCCGUg- -3'
miRNA:   3'- -CGcCGGCagGGGGCGA-----UGGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 69424 0.67 0.609904
Target:  5'- uGCGcUCGUgCCCCGCgaaacgGCCUUCGCcCa -3'
miRNA:   3'- -CGCcGGCAgGGGGCGa-----UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 70895 0.68 0.563067
Target:  5'- cGgGGCCGccgCCUCCGCcccgccgugGCCgccgaaCCGCUCg -3'
miRNA:   3'- -CgCCGGCa--GGGGGCGa--------UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 70957 0.66 0.713059
Target:  5'- gGCcGCCGgcgCCCCCGCcgaaGCCguacucggCCGCg- -3'
miRNA:   3'- -CGcCGGCa--GGGGGCGa---UGGa-------GGCGag -5'
8959 3' -63.6 NC_002512.2 + 71028 0.7 0.448207
Target:  5'- cCGGCCGgucgacgacgacgucCCCCCGCUcCC-CCGCgUCa -3'
miRNA:   3'- cGCCGGCa--------------GGGGGCGAuGGaGGCG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.