Results 41 - 60 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 3' | -63.6 | NC_002512.2 | + | 57233 | 0.73 | 0.292442 |
Target: 5'- cGCGGgCGUCCCcgcaggCCGCgUACCgCCGUUCg -3' miRNA: 3'- -CGCCgGCAGGG------GGCG-AUGGaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 147455 | 0.74 | 0.280087 |
Target: 5'- gGCGGCCGUCUgUCGCUGCugguCUUCGCg- -3' miRNA: 3'- -CGCCGGCAGGgGGCGAUG----GAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 12788 | 0.74 | 0.256627 |
Target: 5'- gGCGGCg--CCCCCGCUGCCcCUGCg- -3' miRNA: 3'- -CGCCGgcaGGGGGCGAUGGaGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 61769 | 0.75 | 0.251019 |
Target: 5'- cGCGGCCGggCCCCUcucCUACC-CUGCUCc -3' miRNA: 3'- -CGCCGGCa-GGGGGc--GAUGGaGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 29050 | 0.75 | 0.234801 |
Target: 5'- aCGcGCCGcgCCCCCGCUgACCUUCGCg- -3' miRNA: 3'- cGC-CGGCa-GGGGGCGA-UGGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 139323 | 0.72 | 0.332046 |
Target: 5'- cGgGGCCGUCgCCCuCGCccucguCCUCcCGCUCc -3' miRNA: 3'- -CgCCGGCAG-GGG-GCGau----GGAG-GCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 28243 | 0.72 | 0.373944 |
Target: 5'- cGgGGCCGUCgCgCCGCgaguacgacggcGCCUaCCGCUCg -3' miRNA: 3'- -CgCCGGCAGgG-GGCGa-----------UGGA-GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 85582 | 0.7 | 0.463506 |
Target: 5'- aGCGGCCGggagagcgCgUCCGCguucgggUGCCUCCGC-Cg -3' miRNA: 3'- -CGCCGGCa-------GgGGGCG-------AUGGAGGCGaG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 71028 | 0.7 | 0.448207 |
Target: 5'- cCGGCCGgucgacgacgacgucCCCCCGCUcCC-CCGCgUCa -3' miRNA: 3'- cGCCGGCa--------------GGGGGCGAuGGaGGCG-AG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 155239 | 0.7 | 0.447366 |
Target: 5'- cGCGGCCGUCCcgCCCGUcgcgGCgUCgacgGCUCg -3' miRNA: 3'- -CGCCGGCAGG--GGGCGa---UGgAGg---CGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 83170 | 0.7 | 0.447366 |
Target: 5'- cGCGGCCGcCgCCCCGCcgucgUCUCCGUc- -3' miRNA: 3'- -CGCCGGCaG-GGGGCGau---GGAGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 121934 | 0.7 | 0.447366 |
Target: 5'- gGCGGCgGUCCcggaCCCGCggcgaugAUgUUCGCUCa -3' miRNA: 3'- -CGCCGgCAGG----GGGCGa------UGgAGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 132028 | 0.7 | 0.438997 |
Target: 5'- gGCGGguCCGUCUCggUCGUcGCCUCCGCUUc -3' miRNA: 3'- -CGCC--GGCAGGG--GGCGaUGGAGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 102794 | 0.7 | 0.430719 |
Target: 5'- cGCcGCCG-CCgCCGC--CCUCCGCUCc -3' miRNA: 3'- -CGcCGGCaGGgGGCGauGGAGGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 135250 | 0.7 | 0.430719 |
Target: 5'- -aGGCCGUCgUCCGC-GCCg-CGCUCg -3' miRNA: 3'- cgCCGGCAGgGGGCGaUGGagGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 31868 | 0.71 | 0.422533 |
Target: 5'- cGCGcGCgCGUCCCUCGCccccguCCgucgcCCGCUCg -3' miRNA: 3'- -CGC-CG-GCAGGGGGCGau----GGa----GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 134090 | 0.71 | 0.398547 |
Target: 5'- uCGGauccgCGUCCCCgGC-GCCUaCCGCUCg -3' miRNA: 3'- cGCCg----GCAGGGGgCGaUGGA-GGCGAG- -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 39671 | 0.71 | 0.398547 |
Target: 5'- cGUGGCCGUCCCggacgaccgcgCCGCcgACCuUCUGCa- -3' miRNA: 3'- -CGCCGGCAGGG-----------GGCGa-UGG-AGGCGag -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 59057 | 0.71 | 0.390748 |
Target: 5'- -gGGUCG-CCgCCGCUGCCgCCGCUg -3' miRNA: 3'- cgCCGGCaGGgGGCGAUGGaGGCGAg -5' |
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8959 | 3' | -63.6 | NC_002512.2 | + | 7472 | 0.71 | 0.383049 |
Target: 5'- cGCGGCUGccggCCCCCGCcgaaGCCgcggCGCUCc -3' miRNA: 3'- -CGCCGGCa---GGGGGCGa---UGGag--GCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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