miRNA display CGI


Results 81 - 100 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 96094 0.67 0.638219
Target:  5'- cGCGaCCGUCguCCCCGCcGCCgCCGUcgUCg -3'
miRNA:   3'- -CGCcGGCAG--GGGGCGaUGGaGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 222591 0.67 0.638219
Target:  5'- cGCGGaggaggccuguCCGgCCCCCGggGCCUCgCGCcCg -3'
miRNA:   3'- -CGCC-----------GGCaGGGGGCgaUGGAG-GCGaG- -5'
8959 3' -63.6 NC_002512.2 + 127751 0.67 0.632553
Target:  5'- cGCGGCCGUagacggccaggguccCCCuCCGacgGCCgaggCCGCa- -3'
miRNA:   3'- -CGCCGGCA---------------GGG-GGCga-UGGa---GGCGag -5'
8959 3' -63.6 NC_002512.2 + 129874 0.67 0.632553
Target:  5'- gGCGGCgGgggauucgccgucgCCCUCGCcgACgaUCCGCUCu -3'
miRNA:   3'- -CGCCGgCa-------------GGGGGCGa-UGg-AGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 205032 0.67 0.628776
Target:  5'- cGgGGCCGcgUCCgCCGCcgACCggCCGCg- -3'
miRNA:   3'- -CgCCGGC--AGGgGGCGa-UGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 5631 0.67 0.628776
Target:  5'- cGCGGgCGUCgggcgccgaCCCGCcuCCcCCGCUCa -3'
miRNA:   3'- -CGCCgGCAGg--------GGGCGauGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 152743 0.67 0.623111
Target:  5'- gGCGGUCGgaaggUCCCCCGacggcgaggucuCUaucgaugaccgccggGCCUCCGuCUCg -3'
miRNA:   3'- -CGCCGGC-----AGGGGGC------------GA---------------UGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 117965 0.67 0.619336
Target:  5'- cGUGGaCGcUCCCCGCcugGCCgugCUGCUCg -3'
miRNA:   3'- -CGCCgGCaGGGGGCGa--UGGa--GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 118703 0.67 0.619336
Target:  5'- cGUGGgCuUCCCCCGCcug--CCGCUCg -3'
miRNA:   3'- -CGCCgGcAGGGGGCGauggaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 102520 0.67 0.619336
Target:  5'- cGCGGCCGUcgggggucaggCCCCCGguuuccCUACCgaCUGCg- -3'
miRNA:   3'- -CGCCGGCA-----------GGGGGC------GAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 129587 0.67 0.619336
Target:  5'- uCGGCCccgucgCCCCCGaCgaacucGCC-CCGCUCg -3'
miRNA:   3'- cGCCGGca----GGGGGC-Ga-----UGGaGGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 134698 0.67 0.619336
Target:  5'- cGCGGaCGUCCuCUCGCgggcGCuCUCCGCc- -3'
miRNA:   3'- -CGCCgGCAGG-GGGCGa---UG-GAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 196075 0.67 0.619336
Target:  5'- cGgGGCCuUCgCCCUGCUcgcgcuCCUCUGCUg -3'
miRNA:   3'- -CgCCGGcAG-GGGGCGAu-----GGAGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 80591 0.67 0.619336
Target:  5'- cGCGGCgGUCgacgaUCUCGCccuCCUCgCGCUCc -3'
miRNA:   3'- -CGCCGgCAG-----GGGGCGau-GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 129797 0.67 0.609904
Target:  5'- cCGGCaGUCCCCC-CUuccGCCUCUuCUCg -3'
miRNA:   3'- cGCCGgCAGGGGGcGA---UGGAGGcGAG- -5'
8959 3' -63.6 NC_002512.2 + 69424 0.67 0.609904
Target:  5'- uGCGcUCGUgCCCCGCgaaacgGCCUUCGCcCa -3'
miRNA:   3'- -CGCcGGCAgGGGGCGa-----UGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 82991 0.67 0.609904
Target:  5'- uCGGCCG-CCUCCaGCUgcgccuggGCCUCCGggCg -3'
miRNA:   3'- cGCCGGCaGGGGG-CGA--------UGGAGGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 80141 0.67 0.609904
Target:  5'- cGgGGUCGUCCCCCuCgucguCCUCCucGCUg -3'
miRNA:   3'- -CgCCGGCAGGGGGcGau---GGAGG--CGAg -5'
8959 3' -63.6 NC_002512.2 + 5989 0.67 0.609904
Target:  5'- cCGcGCCG-CUCCCGCU-CCUCCucCUCg -3'
miRNA:   3'- cGC-CGGCaGGGGGCGAuGGAGGc-GAG- -5'
8959 3' -63.6 NC_002512.2 + 25223 0.67 0.608961
Target:  5'- aGCGaGCCGccggcgaUCCCCCGCgcgucGCCgucCCGgUCc -3'
miRNA:   3'- -CGC-CGGC-------AGGGGGCGa----UGGa--GGCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.