miRNA display CGI


Results 61 - 80 of 264 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 3' -63.6 NC_002512.2 + 72074 0.76 0.195826
Target:  5'- cGCGGCCGgCCCCCGCagcgACCUgcacaCCGCcCg -3'
miRNA:   3'- -CGCCGGCaGGGGGCGa---UGGA-----GGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 73365 0.66 0.675884
Target:  5'- cGCcGCCGgaCCCCCGC-GCC-CCGC-Cg -3'
miRNA:   3'- -CGcCGGCa-GGGGGCGaUGGaGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 74595 0.66 0.675884
Target:  5'- -aGGCCGgggCCCUCcgucggcucgaGCcGCCUCgGCUCc -3'
miRNA:   3'- cgCCGGCa--GGGGG-----------CGaUGGAGgCGAG- -5'
8959 3' -63.6 NC_002512.2 + 75069 0.73 0.32518
Target:  5'- aCuGCCG-CCgCCGCUGCCUCCgucGCUCa -3'
miRNA:   3'- cGcCGGCaGGgGGCGAUGGAGG---CGAG- -5'
8959 3' -63.6 NC_002512.2 + 75164 0.66 0.656144
Target:  5'- cGCGGacgcaacgccguuCCGUCgCgCCGCUcgacGCCggacggCCGCUCg -3'
miRNA:   3'- -CGCC-------------GGCAGgG-GGCGA----UGGa-----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 76702 0.66 0.694561
Target:  5'- uGCcGCCcUCCCcaCCGCUGCCcgCCGCc- -3'
miRNA:   3'- -CGcCGGcAGGG--GGCGAUGGa-GGCGag -5'
8959 3' -63.6 NC_002512.2 + 76942 0.66 0.666497
Target:  5'- cGgGGaCCG-CUCCCGCUgaccgACCggggaCCGCUCc -3'
miRNA:   3'- -CgCC-GGCaGGGGGCGA-----UGGa----GGCGAG- -5'
8959 3' -63.6 NC_002512.2 + 79348 0.69 0.481692
Target:  5'- cGCGGCggCGUaCCCUCGCgGCCgCCGCg- -3'
miRNA:   3'- -CGCCG--GCA-GGGGGCGaUGGaGGCGag -5'
8959 3' -63.6 NC_002512.2 + 79567 0.67 0.600486
Target:  5'- cGCGG-CGUCCucgccgccgguCUCGCU-CCUCCGcCUCu -3'
miRNA:   3'- -CGCCgGCAGG-----------GGGCGAuGGAGGC-GAG- -5'
8959 3' -63.6 NC_002512.2 + 79827 0.69 0.499328
Target:  5'- gGCGGCgGUCCCCC-CUcccGCC-CCGUcgUCc -3'
miRNA:   3'- -CGCCGgCAGGGGGcGA---UGGaGGCG--AG- -5'
8959 3' -63.6 NC_002512.2 + 80141 0.67 0.609904
Target:  5'- cGgGGUCGUCCCCCuCgucguCCUCCucGCUg -3'
miRNA:   3'- -CgCCGGCAGGGGGcGau---GGAGG--CGAg -5'
8959 3' -63.6 NC_002512.2 + 80591 0.67 0.619336
Target:  5'- cGCGGCgGUCgacgaUCUCGCccuCCUCgCGCUCc -3'
miRNA:   3'- -CGCCGgCAG-----GGGGCGau-GGAG-GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 82991 0.67 0.609904
Target:  5'- uCGGCCG-CCUCCaGCUgcgccuggGCCUCCGggCg -3'
miRNA:   3'- cGCCGGCaGGGGG-CGA--------UGGAGGCgaG- -5'
8959 3' -63.6 NC_002512.2 + 83170 0.7 0.447366
Target:  5'- cGCGGCCGcCgCCCCGCcgucgUCUCCGUc- -3'
miRNA:   3'- -CGCCGGCaG-GGGGCGau---GGAGGCGag -5'
8959 3' -63.6 NC_002512.2 + 85582 0.7 0.463506
Target:  5'- aGCGGCCGggagagcgCgUCCGCguucgggUGCCUCCGC-Cg -3'
miRNA:   3'- -CGCCGGCa-------GgGGGCG-------AUGGAGGCGaG- -5'
8959 3' -63.6 NC_002512.2 + 86156 0.7 0.464364
Target:  5'- cGCGGCCG-CCUCCGagGCC-CUGCUg -3'
miRNA:   3'- -CGCCGGCaGGGGGCgaUGGaGGCGAg -5'
8959 3' -63.6 NC_002512.2 + 94096 0.69 0.516344
Target:  5'- gGCGGCCGguccgacUCCUCCGCcaGCCUCuCGUc- -3'
miRNA:   3'- -CGCCGGC-------AGGGGGCGa-UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 94301 0.7 0.456672
Target:  5'- aGCGGUCGUCCaCCCGgUugCgccccggcgcgaaaCGCUCg -3'
miRNA:   3'- -CGCCGGCAGG-GGGCgAugGag------------GCGAG- -5'
8959 3' -63.6 NC_002512.2 + 95651 0.68 0.581715
Target:  5'- uCGGCCGcCCCCgGCacaGCCUCuCGUg- -3'
miRNA:   3'- cGCCGGCaGGGGgCGa--UGGAG-GCGag -5'
8959 3' -63.6 NC_002512.2 + 96094 0.67 0.638219
Target:  5'- cGCGaCCGUCguCCCCGCcGCCgCCGUcgUCg -3'
miRNA:   3'- -CGCcGGCAG--GGGGCGaUGGaGGCG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.