miRNA display CGI


Results 81 - 100 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 116972 0.68 0.923951
Target:  5'- -cGAGCUgcUGaUCGAGCUGGuccgcgacgcgGCGACCGa -3'
miRNA:   3'- ucCUCGA--GC-AGCUCGACU-----------UGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 24223 0.68 0.92395
Target:  5'- cGGAGCUguccgaggCGUCGGGCccgcCGACgGCg -3'
miRNA:   3'- uCCUCGA--------GCAGCUCGacuuGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 155960 0.68 0.920744
Target:  5'- gAGGAGUUCGUgaagcagcaCGGccuguacguccccgcGCUGAGCGAgUGCc -3'
miRNA:   3'- -UCCUCGAGCA---------GCU---------------CGACUUGCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 207108 0.68 0.920744
Target:  5'- cGGGcgcgcAGCUCGUCGGGCaccagcugguuguacUGGcacACGAUCGUc -3'
miRNA:   3'- -UCC-----UCGAGCAGCUCG---------------ACU---UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 157152 0.68 0.918561
Target:  5'- cGGGGCgggCGgCGGGCcgggcggcgUGGGCGGCgGCg -3'
miRNA:   3'- uCCUCGa--GCaGCUCG---------ACUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 222708 0.68 0.918561
Target:  5'- gAGGAGUgCGUCGccaccugccuGCUGGACGGCaacgGCc -3'
miRNA:   3'- -UCCUCGaGCAGCu---------CGACUUGCUGg---CG- -5'
8959 5' -55.8 NC_002512.2 + 189832 0.68 0.918561
Target:  5'- uGGAGuCUCGUcccgCGGGCgaAACGuCCGCa -3'
miRNA:   3'- uCCUC-GAGCA----GCUCGacUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 204828 0.68 0.918561
Target:  5'- cGGcGGCUcCGUCcGGgaGGACGACgGCg -3'
miRNA:   3'- uCC-UCGA-GCAGcUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 53706 0.68 0.918561
Target:  5'- gAGGAGCuggagaagcugUCGgccagguacuUCGAGCUGcugcgcGACGuCCGCg -3'
miRNA:   3'- -UCCUCG-----------AGC----------AGCUCGAC------UUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 33184 0.68 0.918561
Target:  5'- -aGAGC-CgGUCGGGCUGGcggACGguGCCGCu -3'
miRNA:   3'- ucCUCGaG-CAGCUCGACU---UGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 145513 0.68 0.916901
Target:  5'- cGGGGCUgcuccggcucugcgCGUCGGGCcgGAGCaucCCGCu -3'
miRNA:   3'- uCCUCGA--------------GCAGCUCGa-CUUGcu-GGCG- -5'
8959 5' -55.8 NC_002512.2 + 123761 0.68 0.9169
Target:  5'- cGGAGCUCcUCGGGCucucccgugacgucUGGcucgugaacGCGACCGg -3'
miRNA:   3'- uCCUCGAGcAGCUCG--------------ACU---------UGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 199706 0.68 0.916343
Target:  5'- cGGGGGCUCGaguguuaaauaaucUCGAcaaCUGAcacggucAUGGCCGCg -3'
miRNA:   3'- -UCCUCGAGC--------------AGCUc--GACU-------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 18688 0.68 0.91522
Target:  5'- -aGAGCUCGUgggcggcgggcacccCGAGCaGGGCGGCgaCGCg -3'
miRNA:   3'- ucCUCGAGCA---------------GCUCGaCUUGCUG--GCG- -5'
8959 5' -55.8 NC_002512.2 + 228100 0.68 0.912948
Target:  5'- cGGGAGCgaggagggCGUCGGccgcaacgucguGCUGGGCG-CCGa -3'
miRNA:   3'- -UCCUCGa-------GCAGCU------------CGACUUGCuGGCg -5'
8959 5' -55.8 NC_002512.2 + 138145 0.68 0.912948
Target:  5'- gAGGcGUUCuUCGGGCUGA-CGAacuguCCGCa -3'
miRNA:   3'- -UCCuCGAGcAGCUCGACUuGCU-----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 2070 0.68 0.912948
Target:  5'- cGGGAGCgcggaguccaCGcCGGGCggGAgcgggcgguACGGCCGCg -3'
miRNA:   3'- -UCCUCGa---------GCaGCUCGa-CU---------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 88461 0.68 0.912948
Target:  5'- cGGGGGCUCGUac----GAACaGACCGCg -3'
miRNA:   3'- -UCCUCGAGCAgcucgaCUUG-CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 214233 0.68 0.907113
Target:  5'- cAGGcGGCUCGUCG-GCUcgcCGcCCGCg -3'
miRNA:   3'- -UCC-UCGAGCAGCuCGAcuuGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 164261 0.68 0.901058
Target:  5'- cGGGGGC-CGUCGGGU----CGAUCGCc -3'
miRNA:   3'- -UCCUCGaGCAGCUCGacuuGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.