miRNA display CGI


Results 61 - 80 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 132591 0.67 0.943271
Target:  5'- cAGGGGUUCGgCGAGCaGAcgcuCGGCCu- -3'
miRNA:   3'- -UCCUCGAGCaGCUCGaCUu---GCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 10814 0.67 0.938775
Target:  5'- -uGAGCaCGUCGAGCUcGAA-GcCCGCg -3'
miRNA:   3'- ucCUCGaGCAGCUCGA-CUUgCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 24695 0.67 0.938775
Target:  5'- cGGGGGuCUCGUCGAGgacgcGGGCGAgggagaCGCg -3'
miRNA:   3'- -UCCUC-GAGCAGCUCga---CUUGCUg-----GCG- -5'
8959 5' -55.8 NC_002512.2 + 93596 0.67 0.938775
Target:  5'- uGGuGAGCgUgGUCGGGgaaGAACGGCCGUu -3'
miRNA:   3'- -UC-CUCG-AgCAGCUCga-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 107610 0.67 0.938775
Target:  5'- cAGGAGCagcaccagCGAGUcGGGCGGCUGCc -3'
miRNA:   3'- -UCCUCGagca----GCUCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 129357 0.67 0.935971
Target:  5'- uGGGcAGCgUCGUCGccuucugucucgugcGGgUGcucGACGACCGCg -3'
miRNA:   3'- -UCC-UCG-AGCAGC---------------UCgAC---UUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 184038 0.67 0.934058
Target:  5'- cGGuccGCUgGUCGAGUucgUGugaGACCGCg -3'
miRNA:   3'- uCCu--CGAgCAGCUCG---ACuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 194820 0.67 0.934058
Target:  5'- cAGGAGCUCGgcacCGugguGCUGuccCGGCCcguGCg -3'
miRNA:   3'- -UCCUCGAGCa---GCu---CGACuu-GCUGG---CG- -5'
8959 5' -55.8 NC_002512.2 + 149283 0.67 0.934058
Target:  5'- gAGGAGCg---CGAGgaGGGCGagaucgucgaccGCCGCg -3'
miRNA:   3'- -UCCUCGagcaGCUCgaCUUGC------------UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 127673 0.67 0.934057
Target:  5'- gAGGAcCUCGUCGAcGC-GAuCG-CCGCg -3'
miRNA:   3'- -UCCUcGAGCAGCU-CGaCUuGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 190529 0.67 0.929116
Target:  5'- -cGAGCUgGUCgGGGCgagGGAcCGGCUGCu -3'
miRNA:   3'- ucCUCGAgCAG-CUCGa--CUU-GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130240 0.67 0.929116
Target:  5'- gGGGAucgGCUCGggcgcCGGGCccuccgagGGcgACGACCGCg -3'
miRNA:   3'- -UCCU---CGAGCa----GCUCGa-------CU--UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 18398 0.67 0.929116
Target:  5'- cAGGAGCUCcugcuggacgagGUCGAGgUGucggauccggGGCaGCCGCa -3'
miRNA:   3'- -UCCUCGAG------------CAGCUCgAC----------UUGcUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 86659 0.67 0.929116
Target:  5'- cGGuGGCcgCGUcCGAGC-GGACGGCgCGCg -3'
miRNA:   3'- uCC-UCGa-GCA-GCUCGaCUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 192584 0.67 0.929116
Target:  5'- cGGAGCggacCGUCccGCUGcuGCGGCgCGCg -3'
miRNA:   3'- uCCUCGa---GCAGcuCGACu-UGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 221408 0.67 0.929116
Target:  5'- gGGGAGg-CGgCGGGuCUGuccGACGGCCGCc -3'
miRNA:   3'- -UCCUCgaGCaGCUC-GAC---UUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 116205 0.67 0.929116
Target:  5'- cAGGcaGGCg-GUCGAGCUGAcgaAgGugCGCc -3'
miRNA:   3'- -UCC--UCGagCAGCUCGACU---UgCugGCG- -5'
8959 5' -55.8 NC_002512.2 + 166450 0.67 0.92861
Target:  5'- cGGGGGCgacggCGcCGGGCUcGAgggcggggacggcGgGACCGCg -3'
miRNA:   3'- -UCCUCGa----GCaGCUCGA-CU-------------UgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 102640 0.68 0.923951
Target:  5'- cGGAGCaggaccccgaugUCGUagacCGGGgaGAggGCGGCCGCc -3'
miRNA:   3'- uCCUCG------------AGCA----GCUCgaCU--UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 116972 0.68 0.923951
Target:  5'- -cGAGCUgcUGaUCGAGCUGGuccgcgacgcgGCGACCGa -3'
miRNA:   3'- ucCUCGA--GC-AGCUCGACU-----------UGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.