miRNA display CGI


Results 61 - 80 of 208 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 86659 0.67 0.929116
Target:  5'- cGGuGGCcgCGUcCGAGC-GGACGGCgCGCg -3'
miRNA:   3'- uCC-UCGa-GCA-GCUCGaCUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 88461 0.68 0.912948
Target:  5'- cGGGGGCUCGUac----GAACaGACCGCg -3'
miRNA:   3'- -UCCUCGAGCAgcucgaCUUG-CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 89001 0.66 0.955442
Target:  5'- cGGAGCgcggggaCGUCGGGCaGcGCGAuCCGa -3'
miRNA:   3'- uCCUCGa------GCAGCUCGaCuUGCU-GGCg -5'
8959 5' -55.8 NC_002512.2 + 91084 0.69 0.881595
Target:  5'- cGGGAGCgguUCGUgcgCGAGgaGGACGGgcCCGUg -3'
miRNA:   3'- -UCCUCG---AGCA---GCUCgaCUUGCU--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 91354 0.72 0.731226
Target:  5'- cAGcuGCUCGaCGGGCUGGACGAC-GCg -3'
miRNA:   3'- -UCcuCGAGCaGCUCGACUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 93596 0.67 0.938775
Target:  5'- uGGuGAGCgUgGUCGGGgaaGAACGGCCGUu -3'
miRNA:   3'- -UC-CUCG-AgCAGCUCga-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 94627 0.72 0.731226
Target:  5'- cAGGc-CUCGUCGAGCgcggcgcGGACGACgGCc -3'
miRNA:   3'- -UCCucGAGCAGCUCGa------CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 94819 0.67 0.943271
Target:  5'- gGGGAGC-CGUCccgGAGCcgccggaggaaGAGCGugGCCGCg -3'
miRNA:   3'- -UCCUCGaGCAG---CUCGa----------CUUGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 95083 0.72 0.712052
Target:  5'- cGGAGCUcCGugaaguagaccUCGAGCUcGGCGACgGCg -3'
miRNA:   3'- uCCUCGA-GC-----------AGCUCGAcUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 95529 0.66 0.968723
Target:  5'- --cAGCUCGUggacggugCGGGuCUGGAgcuCGGCCGCg -3'
miRNA:   3'- uccUCGAGCA--------GCUC-GACUU---GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 96839 0.7 0.852762
Target:  5'- cAGGGGCUCaggC-AGCUGcGCGACuCGCu -3'
miRNA:   3'- -UCCUCGAGca-GcUCGACuUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 98321 0.66 0.965706
Target:  5'- gAGGGGCUCGgggccggggaCGGGgaGGGgGGCgGCc -3'
miRNA:   3'- -UCCUCGAGCa---------GCUCgaCUUgCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 98651 0.69 0.880913
Target:  5'- gGGGAGUUCGUCGGcagacauGCguucggGAucguCGugCGCg -3'
miRNA:   3'- -UCCUCGAGCAGCU-------CGa-----CUu---GCugGCG- -5'
8959 5' -55.8 NC_002512.2 + 98935 0.7 0.829967
Target:  5'- gGGGAGCcagagccggaugcaGUCGGGCgggGAAccgggcCGACCGCg -3'
miRNA:   3'- -UCCUCGag------------CAGCUCGa--CUU------GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 99989 0.71 0.786549
Target:  5'- cGGGAGagcggaUCGUCG-GCgaGGGCGACgGCg -3'
miRNA:   3'- -UCCUCg-----AGCAGCuCGa-CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 100034 0.67 0.946708
Target:  5'- aAGGGGCUccucCGcCGGGCgcugagacgcggGGGCGGCgGCg -3'
miRNA:   3'- -UCCUCGA----GCaGCUCGa-----------CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 100229 0.7 0.82094
Target:  5'- gAGGcGGCgUCGaCGGGCg--GCGACCGCg -3'
miRNA:   3'- -UCC-UCG-AGCaGCUCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 100278 0.76 0.52587
Target:  5'- cGGAGCUCGgCGAGCgGGGCGAguUCGUc -3'
miRNA:   3'- uCCUCGAGCaGCUCGaCUUGCU--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 101374 0.67 0.947545
Target:  5'- gGGGAgacgaugacguGCUCGUCgGAGCucgUGGugGugcuCCGCu -3'
miRNA:   3'- -UCCU-----------CGAGCAG-CUCG---ACUugCu---GGCG- -5'
8959 5' -55.8 NC_002512.2 + 101629 0.66 0.968723
Target:  5'- cGGGAcgcgagucgccGCUCGagggGAGCgcGGCGGCCGCg -3'
miRNA:   3'- -UCCU-----------CGAGCag--CUCGacUUGCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.