miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 68592 0.7 0.812565
Target:  5'- cAGGuGCUCGUCGuaGGCc-AGCGACuCGCc -3'
miRNA:   3'- -UCCuCGAGCAGC--UCGacUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 68903 0.69 0.881595
Target:  5'- cGGGGCg-GUCGuGCUGcuGGCcGCCGCg -3'
miRNA:   3'- uCCUCGagCAGCuCGAC--UUGcUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 70736 0.68 0.894784
Target:  5'- cGGGAGCgCGcCcGGCcgccucacuugGAGCGGCCGCg -3'
miRNA:   3'- -UCCUCGaGCaGcUCGa----------CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 70822 0.66 0.968723
Target:  5'- gAGGGGCgCGUCGuccgccucGCcccgGGACGagauGCCGCg -3'
miRNA:   3'- -UCCUCGaGCAGCu-------CGa---CUUGC----UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 71566 0.74 0.603756
Target:  5'- cGGAGCgCGgacUCGcGCcGGACGACCGCg -3'
miRNA:   3'- uCCUCGaGC---AGCuCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 72108 0.67 0.951601
Target:  5'- cGGuuCUUGaugCGAcaGCUGAccaGCGACCGCa -3'
miRNA:   3'- uCCucGAGCa--GCU--CGACU---UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 72887 0.67 0.943271
Target:  5'- cGGGGCUCGggccCGaAGCg--GCGGCCGa -3'
miRNA:   3'- uCCUCGAGCa---GC-UCGacuUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 72922 0.67 0.947545
Target:  5'- cAGGAuGCcgaCGUCG-GC-GAACGGCCGg -3'
miRNA:   3'- -UCCU-CGa--GCAGCuCGaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 74636 0.73 0.682834
Target:  5'- -cGAGC-CGUCGAcgccgcgacggGCgGGACGGCCGCg -3'
miRNA:   3'- ucCUCGaGCAGCU-----------CGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 74773 0.69 0.881595
Target:  5'- cAGGAGCUCuUCcaGGGUgggGAGuCGACUGCu -3'
miRNA:   3'- -UCCUCGAGcAG--CUCGa--CUU-GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 75558 0.66 0.968723
Target:  5'- -cGGGCUCGcCgGGGCgGGGCcGCCGCc -3'
miRNA:   3'- ucCUCGAGCaG-CUCGaCUUGcUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 77203 0.67 0.947545
Target:  5'- gAGGAGgCcccccugCGUCGAGCgaccgggaggcGAACGAgCGCc -3'
miRNA:   3'- -UCCUC-Ga------GCAGCUCGa----------CUUGCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 80788 0.7 0.82094
Target:  5'- gAGGAGCggCG-CGAGgaGGAgGAgCGCg -3'
miRNA:   3'- -UCCUCGa-GCaGCUCgaCUUgCUgGCG- -5'
8959 5' -55.8 NC_002512.2 + 80865 0.71 0.786549
Target:  5'- cGGGGCUCGgugUCGGGCgGuccGCGGCgGCc -3'
miRNA:   3'- uCCUCGAGC---AGCUCGaCu--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 81611 0.66 0.965706
Target:  5'- gAGGuGCUCGUCG-GCc--AgGGCCGUc -3'
miRNA:   3'- -UCCuCGAGCAGCuCGacuUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 82115 0.72 0.712052
Target:  5'- -cGAGC-CG-CGAGUcgGGACGGCCGCg -3'
miRNA:   3'- ucCUCGaGCaGCUCGa-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 82232 0.69 0.888295
Target:  5'- cGGGGC-CGgugaCGguAGCggGAGCGGCCGCc -3'
miRNA:   3'- uCCUCGaGCa---GC--UCGa-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 83148 0.77 0.443239
Target:  5'- -cGAGgUCGUCGGGCccGGCGGCCGCg -3'
miRNA:   3'- ucCUCgAGCAGCUCGacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 83694 0.72 0.750078
Target:  5'- -uGAcGgUCGUCGAGCccaGGGCGACCGUg -3'
miRNA:   3'- ucCU-CgAGCAGCUCGa--CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 85555 0.71 0.768541
Target:  5'- cGGGGCUCGagGAgGCgcgggagcggGAGCGGCCGg -3'
miRNA:   3'- uCCUCGAGCagCU-CGa---------CUUGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.