miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 191524 0.66 0.96249
Target:  5'- gAGGAGgC-CGUgGGGUcGGGCGACCcgGCg -3'
miRNA:   3'- -UCCUC-GaGCAgCUCGaCUUGCUGG--CG- -5'
8959 5' -55.8 NC_002512.2 + 190529 0.67 0.929116
Target:  5'- -cGAGCUgGUCgGGGCgagGGAcCGGCUGCu -3'
miRNA:   3'- ucCUCGAgCAG-CUCGa--CUU-GCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 189964 0.74 0.613646
Target:  5'- cGGAcCUCuUCGAGCUGcGgGACCGCg -3'
miRNA:   3'- uCCUcGAGcAGCUCGACuUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 189832 0.68 0.918561
Target:  5'- uGGAGuCUCGUcccgCGGGCgaAACGuCCGCa -3'
miRNA:   3'- uCCUC-GAGCA----GCUCGacUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 185853 0.78 0.425874
Target:  5'- uGGGAGCgguaCGUCGAGgaGGGCGccucggGCCGCu -3'
miRNA:   3'- -UCCUCGa---GCAGCUCgaCUUGC------UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 185320 0.69 0.881595
Target:  5'- gAGGAGCUgcccgucugCGUCGccGCccGggUGGCCGCc -3'
miRNA:   3'- -UCCUCGA---------GCAGCu-CGa-CuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 184038 0.67 0.934058
Target:  5'- cGGuccGCUgGUCGAGUucgUGugaGACCGCg -3'
miRNA:   3'- uCCu--CGAgCAGCUCG---ACuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 175258 0.71 0.795362
Target:  5'- cAGGGccgcGCUCGgCGgguAGCUG-GCGGCCGCg -3'
miRNA:   3'- -UCCU----CGAGCaGC---UCGACuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 167745 0.7 0.829155
Target:  5'- gAGGAGCU-GcCGGGCgucGGCGACCGg -3'
miRNA:   3'- -UCCUCGAgCaGCUCGac-UUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 166450 0.67 0.92861
Target:  5'- cGGGGGCgacggCGcCGGGCUcGAgggcggggacggcGgGACCGCg -3'
miRNA:   3'- -UCCUCGa----GCaGCUCGA-CU-------------UgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 164261 0.68 0.901058
Target:  5'- cGGGGGC-CGUCGGGU----CGAUCGCc -3'
miRNA:   3'- -UCCUCGaGCAGCUCGacuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 162236 0.68 0.901058
Target:  5'- -cGAGCccgCGUCcggGGGCccgUGGACGACCGUg -3'
miRNA:   3'- ucCUCGa--GCAG---CUCG---ACUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 160870 0.68 0.897319
Target:  5'- gAGGGGCggacaCGUCGgcggaggguucgggaAGCgGGGCGGCCGg -3'
miRNA:   3'- -UCCUCGa----GCAGC---------------UCGaCUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 158798 0.71 0.777606
Target:  5'- cGGGGCgUCGUCGA-CUucuCGGCCGCg -3'
miRNA:   3'- uCCUCG-AGCAGCUcGAcuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 158533 0.68 0.894784
Target:  5'- ---uGCUCGUCacccGGCUGGugGACCuGCu -3'
miRNA:   3'- uccuCGAGCAGc---UCGACUugCUGG-CG- -5'
8959 5' -55.8 NC_002512.2 + 157676 0.71 0.804037
Target:  5'- uGGAGUUCGgcu-GCUGAugGAcuuCCGCg -3'
miRNA:   3'- uCCUCGAGCagcuCGACUugCU---GGCG- -5'
8959 5' -55.8 NC_002512.2 + 157297 0.69 0.874687
Target:  5'- cGGGAGUUCGU-GAGCgUGAuCGguaaccugaACCGCg -3'
miRNA:   3'- -UCCUCGAGCAgCUCG-ACUuGC---------UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 157152 0.68 0.918561
Target:  5'- cGGGGCgggCGgCGGGCcgggcggcgUGGGCGGCgGCg -3'
miRNA:   3'- uCCUCGa--GCaGCUCG---------ACUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 156552 0.7 0.845072
Target:  5'- cGGAGCgCGUgaCG-GCUGAGCGGaaGCg -3'
miRNA:   3'- uCCUCGaGCA--GCuCGACUUGCUggCG- -5'
8959 5' -55.8 NC_002512.2 + 156481 0.74 0.613646
Target:  5'- cGGcGGGCUCGgCGGGCUGGGCGgacACgGCg -3'
miRNA:   3'- -UC-CUCGAGCaGCUCGACUUGC---UGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.