miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 106694 0.66 0.96249
Target:  5'- cGGuGUUCGgcgaugGGGCUcuccgGGAUGACCGCg -3'
miRNA:   3'- uCCuCGAGCag----CUCGA-----CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 121531 0.66 0.95907
Target:  5'- gGGGAGCUCcggcgcgccgggGUCGAGC---ACGAgaCGCu -3'
miRNA:   3'- -UCCUCGAG------------CAGCUCGacuUGCUg-GCG- -5'
8959 5' -55.8 NC_002512.2 + 155381 0.66 0.95907
Target:  5'- cGGGGCggcggCGcCG-GC-GGGCGAUCGCg -3'
miRNA:   3'- uCCUCGa----GCaGCuCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 86659 0.67 0.929116
Target:  5'- cGGuGGCcgCGUcCGAGC-GGACGGCgCGCg -3'
miRNA:   3'- uCC-UCGa-GCA-GCUCGaCUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 107610 0.67 0.938775
Target:  5'- cAGGAGCagcaccagCGAGUcGGGCGGCUGCc -3'
miRNA:   3'- -UCCUCGagca----GCUCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 24695 0.67 0.938775
Target:  5'- cGGGGGuCUCGUCGAGgacgcGGGCGAgggagaCGCg -3'
miRNA:   3'- -UCCUC-GAGCAGCUCga---CUUGCUg-----GCG- -5'
8959 5' -55.8 NC_002512.2 + 93596 0.67 0.938775
Target:  5'- uGGuGAGCgUgGUCGGGgaaGAACGGCCGUu -3'
miRNA:   3'- -UC-CUCG-AgCAGCUCga-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 10814 0.67 0.938775
Target:  5'- -uGAGCaCGUCGAGCUcGAA-GcCCGCg -3'
miRNA:   3'- ucCUCGaGCAGCUCGA-CUUgCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130240 0.67 0.929116
Target:  5'- gGGGAucgGCUCGggcgcCGGGCccuccgagGGcgACGACCGCg -3'
miRNA:   3'- -UCCU---CGAGCa----GCUCGa-------CU--UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 18398 0.67 0.929116
Target:  5'- cAGGAGCUCcugcuggacgagGUCGAGgUGucggauccggGGCaGCCGCa -3'
miRNA:   3'- -UCCUCGAG------------CAGCUCgAC----------UUGcUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 72887 0.67 0.943271
Target:  5'- cGGGGCUCGggccCGaAGCg--GCGGCCGa -3'
miRNA:   3'- uCCUCGAGCa---GC-UCGacuUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 100034 0.67 0.946708
Target:  5'- aAGGGGCUccucCGcCGGGCgcugagacgcggGGGCGGCgGCg -3'
miRNA:   3'- -UCCUCGA----GCaGCUCGa-----------CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 131549 0.67 0.951601
Target:  5'- cGGccAGUUCGUCGcGCUcggGAGCGACUucaGCg -3'
miRNA:   3'- uCC--UCGAGCAGCuCGA---CUUGCUGG---CG- -5'
8959 5' -55.8 NC_002512.2 + 106799 0.67 0.947545
Target:  5'- cGGGGUcgaCGUCGGGaggGGGCGagGCCGCc -3'
miRNA:   3'- uCCUCGa--GCAGCUCga-CUUGC--UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 121893 0.67 0.951995
Target:  5'- gGGGAcGCUCGgcgacgcgcggggagCGAGCggGAcgagGCGGCgGCg -3'
miRNA:   3'- -UCCU-CGAGCa--------------GCUCGa-CU----UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 113670 0.67 0.951601
Target:  5'- gGGGGGCgcaccuUCGUC-AGCU---CGACCGCc -3'
miRNA:   3'- -UCCUCG------AGCAGcUCGAcuuGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 72108 0.67 0.951601
Target:  5'- cGGuuCUUGaugCGAcaGCUGAccaGCGACCGCa -3'
miRNA:   3'- uCCucGAGCa--GCU--CGACU---UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 19854 0.67 0.951206
Target:  5'- cGGAGCggaaggCG-CGAcgguacgGCUGGACGuugguCCGCa -3'
miRNA:   3'- uCCUCGa-----GCaGCU-------CGACUUGCu----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 152305 0.67 0.947545
Target:  5'- aGGGAccGCUCGgCGuGGCUcGGACGcCCGUg -3'
miRNA:   3'- -UCCU--CGAGCaGC-UCGA-CUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 127673 0.67 0.934057
Target:  5'- gAGGAcCUCGUCGAcGC-GAuCG-CCGCg -3'
miRNA:   3'- -UCCUcGAGCAGCU-CGaCUuGCuGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.