miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 153392 0.66 0.96249
Target:  5'- cGGAGCgaCGUgGAGC---GCGGCgGCg -3'
miRNA:   3'- uCCUCGa-GCAgCUCGacuUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 130155 0.66 0.965706
Target:  5'- cGGGGCcCGgcggCGGGCcGGcccGCGACgGCg -3'
miRNA:   3'- uCCUCGaGCa---GCUCGaCU---UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 15299 0.66 0.965706
Target:  5'- cAGGAagagcGuCUCGUCGcccaGGCgggaggGGACGACgCGCg -3'
miRNA:   3'- -UCCU-----C-GAGCAGC----UCGa-----CUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 21308 0.66 0.95907
Target:  5'- cGGAcccGCUgcgCGUCGAGCUcggccuGACGcACCGCc -3'
miRNA:   3'- uCCU---CGA---GCAGCUCGAc-----UUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 135672 0.66 0.96249
Target:  5'- cAGGc-CUCGgaggCGGcGCUcAGCGACCGCa -3'
miRNA:   3'- -UCCucGAGCa---GCU-CGAcUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 140866 0.66 0.96249
Target:  5'- uGGAGUUCGcUCGGaucgcGCUGcccGACGuccCCGCg -3'
miRNA:   3'- uCCUCGAGC-AGCU-----CGAC---UUGCu--GGCG- -5'
8959 5' -55.8 NC_002512.2 + 2849 0.66 0.96249
Target:  5'- cGGGcAGCUgCGgcaCGAGCuUGGGCaGACCGa -3'
miRNA:   3'- -UCC-UCGA-GCa--GCUCG-ACUUG-CUGGCg -5'
8959 5' -55.8 NC_002512.2 + 121531 0.66 0.95907
Target:  5'- gGGGAGCUCcggcgcgccgggGUCGAGC---ACGAgaCGCu -3'
miRNA:   3'- -UCCUCGAG------------CAGCUCGacuUGCUg-GCG- -5'
8959 5' -55.8 NC_002512.2 + 155381 0.66 0.95907
Target:  5'- cGGGGCggcggCGcCG-GC-GGGCGAUCGCg -3'
miRNA:   3'- uCCUCGa----GCaGCuCGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 45274 0.66 0.965393
Target:  5'- cGGGGcgcucgcGCUCGUcucgCGGGUcGGACGgACCGCc -3'
miRNA:   3'- -UCCU-------CGAGCA----GCUCGaCUUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 103344 0.66 0.965706
Target:  5'- uGGGGGCgUCGaCGAGUcc-GgGGCCGCg -3'
miRNA:   3'- -UCCUCG-AGCaGCUCGacuUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 129506 0.66 0.965706
Target:  5'- uGGAGCUCGcUCcuGCUGAcuCGGCaGCu -3'
miRNA:   3'- uCCUCGAGC-AGcuCGACUu-GCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 117397 0.66 0.96249
Target:  5'- ----aCUCGUCGGGCUGcGCGcACaCGCu -3'
miRNA:   3'- uccucGAGCAGCUCGACuUGC-UG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 223798 0.66 0.965706
Target:  5'- cGGGGa-CGUCG-GCg--GCGACCGCc -3'
miRNA:   3'- uCCUCgaGCAGCuCGacuUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 26542 0.66 0.968723
Target:  5'- cGGcAGCUCGcccgaGGGCUGcaaGAUCGCg -3'
miRNA:   3'- uCC-UCGAGCag---CUCGACuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 38926 0.66 0.965706
Target:  5'- gAGGGGC-CGcCGcGGC-GGGCGcCCGCg -3'
miRNA:   3'- -UCCUCGaGCaGC-UCGaCUUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 98321 0.66 0.965706
Target:  5'- gAGGGGCUCGgggccggggaCGGGgaGGGgGGCgGCc -3'
miRNA:   3'- -UCCUCGAGCa---------GCUCgaCUUgCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 28243 0.66 0.965706
Target:  5'- cGGGGC-CGUCGcGCcgcGAguACGACgGCg -3'
miRNA:   3'- uCCUCGaGCAGCuCGa--CU--UGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 81611 0.66 0.965706
Target:  5'- gAGGuGCUCGUCG-GCc--AgGGCCGUc -3'
miRNA:   3'- -UCCuCGAGCAGCuCGacuUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 31827 0.66 0.95907
Target:  5'- gAGGGGacgCG-CGAGacguccCUGuGACGACCGCg -3'
miRNA:   3'- -UCCUCga-GCaGCUC------GAC-UUGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.