miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 221748 0.74 0.633456
Target:  5'- cGGAcGCgcCGUCGAacggcaGCUGGGCGGCCGUc -3'
miRNA:   3'- uCCU-CGa-GCAGCU------CGACUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 194531 0.74 0.633456
Target:  5'- cGGGAuaGCUCGUCGAuGCUGAG-GGCCa- -3'
miRNA:   3'- -UCCU--CGAGCAGCU-CGACUUgCUGGcg -5'
8959 5' -55.8 NC_002512.2 + 123569 0.74 0.643363
Target:  5'- gGGGAGagCGaCGGGCUGGACGAcgggcCCGCg -3'
miRNA:   3'- -UCCUCgaGCaGCUCGACUUGCU-----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 123238 0.74 0.643363
Target:  5'- -cGGGCUCGacuucuUCGAGCUcGACGACCGg -3'
miRNA:   3'- ucCUCGAGC------AGCUCGAcUUGCUGGCg -5'
8959 5' -55.8 NC_002512.2 + 221120 0.74 0.643363
Target:  5'- cGGGAGCUucCGaCGGcGCUGAG-GACCGCg -3'
miRNA:   3'- -UCCUCGA--GCaGCU-CGACUUgCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 209290 0.73 0.663146
Target:  5'- uGGAGCgcugCGUCaAGgaGAACGGCgGCg -3'
miRNA:   3'- uCCUCGa---GCAGcUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 118799 0.73 0.673005
Target:  5'- cGGGAGCUgugggccccCGUCGuGgUcGGCGACCGCg -3'
miRNA:   3'- -UCCUCGA---------GCAGCuCgAcUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 130553 0.73 0.673005
Target:  5'- cGGAuGCUCGUCGAGgaGuucgucguaGGCCGCc -3'
miRNA:   3'- uCCU-CGAGCAGCUCgaCuug------CUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 74636 0.73 0.682834
Target:  5'- -cGAGC-CGUCGAcgccgcgacggGCgGGACGGCCGCg -3'
miRNA:   3'- ucCUCGaGCAGCU-----------CGaCUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 113324 0.73 0.682834
Target:  5'- gAGGGGCUCGUCGcaca-GGCGGCCGUu -3'
miRNA:   3'- -UCCUCGAGCAGCucgacUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 20322 0.73 0.701393
Target:  5'- gAGGAGCUCGUCGA-------GACCGCg -3'
miRNA:   3'- -UCCUCGAGCAGCUcgacuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 121845 0.73 0.702365
Target:  5'- gGGGAGgaCGgCGGGgaGGACGGCgGCg -3'
miRNA:   3'- -UCCUCgaGCaGCUCgaCUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 95083 0.72 0.712052
Target:  5'- cGGAGCUcCGugaaguagaccUCGAGCUcGGCGACgGCg -3'
miRNA:   3'- uCCUCGA-GC-----------AGCUCGAcUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 23098 0.72 0.712052
Target:  5'- cGGAGUUCGgcgugcggaugaUCGcGCUGGACGACCcCa -3'
miRNA:   3'- uCCUCGAGC------------AGCuCGACUUGCUGGcG- -5'
8959 5' -55.8 NC_002512.2 + 82115 0.72 0.712052
Target:  5'- -cGAGC-CG-CGAGUcgGGACGGCCGCg -3'
miRNA:   3'- ucCUCGaGCaGCUCGa-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 195649 0.72 0.712052
Target:  5'- cGGcGGCUcCGUgGAGCUGAACGucACCGa -3'
miRNA:   3'- uCC-UCGA-GCAgCUCGACUUGC--UGGCg -5'
8959 5' -55.8 NC_002512.2 + 122051 0.72 0.721675
Target:  5'- cGGGGCggCGUCGgcGGCUGuGACGACaGCg -3'
miRNA:   3'- uCCUCGa-GCAGC--UCGAC-UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 94627 0.72 0.731226
Target:  5'- cAGGc-CUCGUCGAGCgcggcgcGGACGACgGCc -3'
miRNA:   3'- -UCCucGAGCAGCUCGa------CUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 91354 0.72 0.731226
Target:  5'- cAGcuGCUCGaCGGGCUGGACGAC-GCg -3'
miRNA:   3'- -UCcuCGAGCaGCUCGACUUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 193368 0.72 0.731226
Target:  5'- gAGGAGUUCGUCGccgcgGGCggGGACGACaccgaGUg -3'
miRNA:   3'- -UCCUCGAGCAGC-----UCGa-CUUGCUGg----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.