Results 1 - 20 of 208 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 211075 | 1.12 | 0.003144 |
Target: 5'- cAGGAGCUCGUCGAGCUGAACGACCGCa -3' miRNA: 3'- -UCCUCGAGCAGCUCGACUUGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 156323 | 0.82 | 0.264206 |
Target: 5'- gGGGAGCUCGUCGAgcgGCUGcGgGACCuGCa -3' miRNA: 3'- -UCCUCGAGCAGCU---CGACuUgCUGG-CG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 63022 | 0.78 | 0.408919 |
Target: 5'- cAGGAGCUCGgCGAGCaggGAGCG-CCGg -3' miRNA: 3'- -UCCUCGAGCaGCUCGa--CUUGCuGGCg -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 185853 | 0.78 | 0.425874 |
Target: 5'- uGGGAGCgguaCGUCGAGgaGGGCGccucggGCCGCu -3' miRNA: 3'- -UCCUCGa---GCAGCUCgaCUUGC------UGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 148819 | 0.77 | 0.443239 |
Target: 5'- cGGAGCUCGUCcuggGGGCgguccGGGCGcACCGCu -3' miRNA: 3'- uCCUCGAGCAG----CUCGa----CUUGC-UGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 83148 | 0.77 | 0.443239 |
Target: 5'- -cGAGgUCGUCGGGCccGGCGGCCGCg -3' miRNA: 3'- ucCUCgAGCAGCUCGacUUGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 124757 | 0.76 | 0.506945 |
Target: 5'- uGGAGCcgUCGUCG-GCccaGACGACCGCg -3' miRNA: 3'- uCCUCG--AGCAGCuCGac-UUGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 100278 | 0.76 | 0.52587 |
Target: 5'- cGGAGCUCGgCGAGCgGGGCGAguUCGUc -3' miRNA: 3'- uCCUCGAGCaGCUCGaCUUGCU--GGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 117040 | 0.76 | 0.535432 |
Target: 5'- cGGGAGUUCGcCGAGau-GACGGCCGUg -3' miRNA: 3'- -UCCUCGAGCaGCUCgacUUGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 155439 | 0.75 | 0.554733 |
Target: 5'- uGGAGgUCaUCGAGgUGAGCGACgCGCc -3' miRNA: 3'- uCCUCgAGcAGCUCgACUUGCUG-GCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 19166 | 0.75 | 0.574233 |
Target: 5'- aAGG-GCUCGUCGAcGCUGAggaaGCGGgugaucucCCGCg -3' miRNA: 3'- -UCCuCGAGCAGCU-CGACU----UGCU--------GGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 113250 | 0.75 | 0.574233 |
Target: 5'- cAGGAGcCUCGgcagCGAGggGGGCGGCCGg -3' miRNA: 3'- -UCCUC-GAGCa---GCUCgaCUUGCUGGCg -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 217874 | 0.75 | 0.584044 |
Target: 5'- gGGGAGCgCGUcCGAGaucGGCGGCCGCg -3' miRNA: 3'- -UCCUCGaGCA-GCUCgacUUGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 212427 | 0.75 | 0.593887 |
Target: 5'- cGGGAGgUCGaguUCGGGCcGGcCGGCCGCg -3' miRNA: 3'- -UCCUCgAGC---AGCUCGaCUuGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 123035 | 0.75 | 0.593887 |
Target: 5'- gAGGAGgUCGUCGAGau---CGACUGCa -3' miRNA: 3'- -UCCUCgAGCAGCUCgacuuGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 194237 | 0.74 | 0.603756 |
Target: 5'- cGGuGUcgUCGUCGAGCaUGAugauauucGCGGCCGCc -3' miRNA: 3'- uCCuCG--AGCAGCUCG-ACU--------UGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 71566 | 0.74 | 0.603756 |
Target: 5'- cGGAGCgCGgacUCGcGCcGGACGACCGCg -3' miRNA: 3'- uCCUCGaGC---AGCuCGaCUUGCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 156481 | 0.74 | 0.613646 |
Target: 5'- cGGcGGGCUCGgCGGGCUGGGCGgacACgGCg -3' miRNA: 3'- -UC-CUCGAGCaGCUCGACUUGC---UGgCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 189964 | 0.74 | 0.613646 |
Target: 5'- cGGAcCUCuUCGAGCUGcGgGACCGCg -3' miRNA: 3'- uCCUcGAGcAGCUCGACuUgCUGGCG- -5' |
|||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 191663 | 0.74 | 0.623548 |
Target: 5'- cGGAGaCguccgCGUCccgGGGCUGGGCGACCGg -3' miRNA: 3'- uCCUC-Ga----GCAG---CUCGACUUGCUGGCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home