miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8959 5' -55.8 NC_002512.2 + 2070 0.68 0.912948
Target:  5'- cGGGAGCgcggaguccaCGcCGGGCggGAgcgggcgguACGGCCGCg -3'
miRNA:   3'- -UCCUCGa---------GCaGCUCGa-CU---------UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 2849 0.66 0.96249
Target:  5'- cGGGcAGCUgCGgcaCGAGCuUGGGCaGACCGa -3'
miRNA:   3'- -UCC-UCGA-GCa--GCUCG-ACUUG-CUGGCg -5'
8959 5' -55.8 NC_002512.2 + 4228 0.66 0.955442
Target:  5'- gGGGAGCgggaCGUCGAGCcccGACGGgUGg -3'
miRNA:   3'- -UCCUCGa---GCAGCUCGac-UUGCUgGCg -5'
8959 5' -55.8 NC_002512.2 + 10814 0.67 0.938775
Target:  5'- -uGAGCaCGUCGAGCUcGAA-GcCCGCg -3'
miRNA:   3'- ucCUCGaGCAGCUCGA-CUUgCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 11569 0.7 0.812565
Target:  5'- gAGG-GCUaCGggGAGCacGAGCGGCCGCc -3'
miRNA:   3'- -UCCuCGA-GCagCUCGa-CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 12385 0.69 0.860266
Target:  5'- -cGAGCUCGccuUCGGGCggcGGCGGCgGCg -3'
miRNA:   3'- ucCUCGAGC---AGCUCGac-UUGCUGgCG- -5'
8959 5' -55.8 NC_002512.2 + 15299 0.66 0.965706
Target:  5'- cAGGAagagcGuCUCGUCGcccaGGCgggaggGGACGACgCGCg -3'
miRNA:   3'- -UCCU-----C-GAGCAGC----UCGa-----CUUGCUG-GCG- -5'
8959 5' -55.8 NC_002512.2 + 18398 0.67 0.929116
Target:  5'- cAGGAGCUCcugcuggacgagGUCGAGgUGucggauccggGGCaGCCGCa -3'
miRNA:   3'- -UCCUCGAG------------CAGCUCgAC----------UUGcUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 18688 0.68 0.91522
Target:  5'- -aGAGCUCGUgggcggcgggcacccCGAGCaGGGCGGCgaCGCg -3'
miRNA:   3'- ucCUCGAGCA---------------GCUCGaCUUGCUG--GCG- -5'
8959 5' -55.8 NC_002512.2 + 18826 0.69 0.873281
Target:  5'- -cGAGCUCcuggacgagCGAGCggagguagcgggGGACGGCCGCg -3'
miRNA:   3'- ucCUCGAGca-------GCUCGa-----------CUUGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 19166 0.75 0.574233
Target:  5'- aAGG-GCUCGUCGAcGCUGAggaaGCGGgugaucucCCGCg -3'
miRNA:   3'- -UCCuCGAGCAGCU-CGACU----UGCU--------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 19854 0.67 0.951206
Target:  5'- cGGAGCggaaggCG-CGAcgguacgGCUGGACGuugguCCGCa -3'
miRNA:   3'- uCCUCGa-----GCaGCU-------CGACUUGCu----GGCG- -5'
8959 5' -55.8 NC_002512.2 + 20322 0.73 0.701393
Target:  5'- gAGGAGCUCGUCGA-------GACCGCg -3'
miRNA:   3'- -UCCUCGAGCAGCUcgacuugCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 20661 0.7 0.845072
Target:  5'- cAGGAGCUCGUguuugaccgugaCGGGCcGcaGGCG-CCGCu -3'
miRNA:   3'- -UCCUCGAGCA------------GCUCGaC--UUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 20839 0.72 0.740696
Target:  5'- gAGGAGC-CGUCGGaaucGCUccggGAcGCGGCCGCc -3'
miRNA:   3'- -UCCUCGaGCAGCU----CGA----CU-UGCUGGCG- -5'
8959 5' -55.8 NC_002512.2 + 21308 0.66 0.95907
Target:  5'- cGGAcccGCUgcgCGUCGAGCUcggccuGACGcACCGCc -3'
miRNA:   3'- uCCU---CGA---GCAGCUCGAc-----UUGC-UGGCG- -5'
8959 5' -55.8 NC_002512.2 + 22088 0.66 0.958717
Target:  5'- cGGaGAGCUCGUCcGGCcggGAgACGAcgccgucCCGCa -3'
miRNA:   3'- -UC-CUCGAGCAGcUCGa--CU-UGCU-------GGCG- -5'
8959 5' -55.8 NC_002512.2 + 22778 0.69 0.874687
Target:  5'- uGGuGCcCGaCGAGCUGcGCGcCCGCu -3'
miRNA:   3'- uCCuCGaGCaGCUCGACuUGCuGGCG- -5'
8959 5' -55.8 NC_002512.2 + 23098 0.72 0.712052
Target:  5'- cGGAGUUCGgcgugcggaugaUCGcGCUGGACGACCcCa -3'
miRNA:   3'- uCCUCGAGC------------AGCuCGACUUGCUGGcG- -5'
8959 5' -55.8 NC_002512.2 + 24223 0.68 0.92395
Target:  5'- cGGAGCUguccgaggCGUCGGGCccgcCGACgGCg -3'
miRNA:   3'- uCCUCGA--------GCAGCUCGacuuGCUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.