Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8959 | 5' | -55.8 | NC_002512.2 | + | 2070 | 0.68 | 0.912948 |
Target: 5'- cGGGAGCgcggaguccaCGcCGGGCggGAgcgggcgguACGGCCGCg -3' miRNA: 3'- -UCCUCGa---------GCaGCUCGa-CU---------UGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 2849 | 0.66 | 0.96249 |
Target: 5'- cGGGcAGCUgCGgcaCGAGCuUGGGCaGACCGa -3' miRNA: 3'- -UCC-UCGA-GCa--GCUCG-ACUUG-CUGGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 4228 | 0.66 | 0.955442 |
Target: 5'- gGGGAGCgggaCGUCGAGCcccGACGGgUGg -3' miRNA: 3'- -UCCUCGa---GCAGCUCGac-UUGCUgGCg -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 10814 | 0.67 | 0.938775 |
Target: 5'- -uGAGCaCGUCGAGCUcGAA-GcCCGCg -3' miRNA: 3'- ucCUCGaGCAGCUCGA-CUUgCuGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 11569 | 0.7 | 0.812565 |
Target: 5'- gAGG-GCUaCGggGAGCacGAGCGGCCGCc -3' miRNA: 3'- -UCCuCGA-GCagCUCGa-CUUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 12385 | 0.69 | 0.860266 |
Target: 5'- -cGAGCUCGccuUCGGGCggcGGCGGCgGCg -3' miRNA: 3'- ucCUCGAGC---AGCUCGac-UUGCUGgCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 15299 | 0.66 | 0.965706 |
Target: 5'- cAGGAagagcGuCUCGUCGcccaGGCgggaggGGACGACgCGCg -3' miRNA: 3'- -UCCU-----C-GAGCAGC----UCGa-----CUUGCUG-GCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 18398 | 0.67 | 0.929116 |
Target: 5'- cAGGAGCUCcugcuggacgagGUCGAGgUGucggauccggGGCaGCCGCa -3' miRNA: 3'- -UCCUCGAG------------CAGCUCgAC----------UUGcUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 18688 | 0.68 | 0.91522 |
Target: 5'- -aGAGCUCGUgggcggcgggcacccCGAGCaGGGCGGCgaCGCg -3' miRNA: 3'- ucCUCGAGCA---------------GCUCGaCUUGCUG--GCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 18826 | 0.69 | 0.873281 |
Target: 5'- -cGAGCUCcuggacgagCGAGCggagguagcgggGGACGGCCGCg -3' miRNA: 3'- ucCUCGAGca-------GCUCGa-----------CUUGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 19166 | 0.75 | 0.574233 |
Target: 5'- aAGG-GCUCGUCGAcGCUGAggaaGCGGgugaucucCCGCg -3' miRNA: 3'- -UCCuCGAGCAGCU-CGACU----UGCU--------GGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 19854 | 0.67 | 0.951206 |
Target: 5'- cGGAGCggaaggCG-CGAcgguacgGCUGGACGuugguCCGCa -3' miRNA: 3'- uCCUCGa-----GCaGCU-------CGACUUGCu----GGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 20322 | 0.73 | 0.701393 |
Target: 5'- gAGGAGCUCGUCGA-------GACCGCg -3' miRNA: 3'- -UCCUCGAGCAGCUcgacuugCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 20661 | 0.7 | 0.845072 |
Target: 5'- cAGGAGCUCGUguuugaccgugaCGGGCcGcaGGCG-CCGCu -3' miRNA: 3'- -UCCUCGAGCA------------GCUCGaC--UUGCuGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 20839 | 0.72 | 0.740696 |
Target: 5'- gAGGAGC-CGUCGGaaucGCUccggGAcGCGGCCGCc -3' miRNA: 3'- -UCCUCGaGCAGCU----CGA----CU-UGCUGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 21308 | 0.66 | 0.95907 |
Target: 5'- cGGAcccGCUgcgCGUCGAGCUcggccuGACGcACCGCc -3' miRNA: 3'- uCCU---CGA---GCAGCUCGAc-----UUGC-UGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 22088 | 0.66 | 0.958717 |
Target: 5'- cGGaGAGCUCGUCcGGCcggGAgACGAcgccgucCCGCa -3' miRNA: 3'- -UC-CUCGAGCAGcUCGa--CU-UGCU-------GGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 22778 | 0.69 | 0.874687 |
Target: 5'- uGGuGCcCGaCGAGCUGcGCGcCCGCu -3' miRNA: 3'- uCCuCGaGCaGCUCGACuUGCuGGCG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 23098 | 0.72 | 0.712052 |
Target: 5'- cGGAGUUCGgcgugcggaugaUCGcGCUGGACGACCcCa -3' miRNA: 3'- uCCUCGAGC------------AGCuCGACUUGCUGGcG- -5' |
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8959 | 5' | -55.8 | NC_002512.2 | + | 24223 | 0.68 | 0.92395 |
Target: 5'- cGGAGCUguccgaggCGUCGGGCccgcCGACgGCg -3' miRNA: 3'- uCCUCGA--------GCAGCUCGacuuGCUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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